Merge pull request #978 from usegalaxy-eu/trimmomatic_remove_maxpermsize

Remove deprecated `-XX:MaxPermSize=2G` command line option to fix trimmomatic
usegalaxy-eu · Nov 2, 2023 · faccc45 · faccc45
2 parents 33990ba + 7388814
commit faccc45
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml
@@ -977,7 +977,7 @@ tools:
 
   toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/.*:
     env:
-      _JAVA_OPTIONS: -XX:MaxPermSize=2G -Xmx6G -Xms1G -Djava.io.tmpdir=/data/2/galaxy_db/tmp -Duser.home=/data/2/galaxy_db/tmp
+      _JAVA_OPTIONS: -Xmx6G -Xms1G -Djava.io.tmpdir=/data/2/galaxy_db/tmp -Duser.home=/data/2/galaxy_db/tmp
 
   toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/.*:
     cores: 16