Classification of Chemotherapy Pathological Image

2022年卒-備瀬研-荒木健吾

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Task

• 3-class classification
• Calculate residual tumor ratio of each WSI
  residual tumor ratio: Residual tumor/ (Residual turmor + Tumor bed)

Dataset

Chemotherapy Whole Slide Image (WSI)

Class:

• Non-Neoplasm
• Tumor bed
• Residual tumor

Extension:
WSI (.ndpi), Annotation file (.xml)

Number of samples:
(March 9th, 2022)

• WSI: 112
• Case (Patient): 55

About ndpi/xml name:
e.g., H〇〇-〇〇〇〇〇_■.ndpi/xml

• H〇〇-〇〇〇〇〇: Case name
• ■: Serial number of the case

Directory

• analysis:
  To calculate residual tumor ratio
• annotation:
  To preprocess and visualize annotated area from original WSI (.ndpi)annotation file (.xml)
• config:
  Config files of experiments (src & src_multi)
• environment:
  Environment files for this project (Anaconda)
• preprocess:
  Preprocess for an experiment. Split into patches basis on its annotated class.
• src:
  Experimet files for single-scale model
• src_multi:
  Experiment files for multi-scale model
• visualize:
  To modify a figure

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