Get protein embeddings from protein sequences

Protein Secondary Structure predictor using Convolutional Neural Networks

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

Python framework for interpretable protein prediction

Transmembrane proteins predicted through Language Model embeddings

cTPnet Package

Prediction of Binding Residues in Disordered Regions Based on Protein Embeddings; TUM Master Praktikum Bioinformatics 2022 (Project #3) and Master's Thesis

Code and results for the practical exercises of the course "Protein Prediction 2" in Winter 21/22 at TUM Authors: Adrian Henkel, Finn Gaida, Lis Arend, Sebastian Dötsch, Shlomo Libo Feigin

Utilizes Markov Models to predict protein coding genes

Scripts and data regarding Vampyrellida genomics.

This repository implements an SVM-based predictor for signal peptides. It includes a comparison with a weight matrix method, showing enhanced accuracy in identifying signal peptides in eukaryotic sequences.

Predicting phosphorylation sites from sequence and structure via a GNN

Transmembrane proteins predicted through Language Model embeddings

Repository for the software engineering project during the second year of the Master of Bioinformatics at the University of Bordeaux.

HNOXPred: a web tool for the prediction of gas sensing H-NOX proteins from amino acid sequence

Repository containing bio_embeddings resources