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mc-eigen-lapack

Description

This program computes eigenvalues of a transition rates matrix corresponding to a Markov chain model and saves them into the files.

  • vm_INa_LAPACK.dat : grid of membrane voltage
  • evals_INa_LAPACK.dat : eigenvalues
  • left_evecs_INa_LAPACK.dat : left eigenvector matrix
  • right_evecs_INa_LAPACK.dat : right eigenvector matrix

Those files can be then used for the exponential integration from a cellular model of the Markov Chain matrix using Matrix Rush-Larsen method.

Dependencies

This program requires C compiler and LAPACK with the LAPACKe API for C.

Optionally Make for a simple compilation by make.

Compilation

The program is compiled by a command

gcc -Wall -I/usr/include/lapacke/ -llapacke -llapack -lm inaEigenLAPACK -o inaEigenLAPACK

Running

Run the program by a command: ./inaEigenLAPACK which creates files in the same directory where it is run. You can refer to those files from the cellular model.

License

Free software under GNU GPLv3.