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Surface areas #107

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Surface areas #107

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3b44c7e
refactor volume fraction computation
daubners Jan 15, 2025
1469ab7
add through feature computation
daubners Jan 15, 2025
c53e818
check inf for blocked pores
daubners Jan 15, 2025
a675fe2
update requirements
daubners Jan 15, 2025
1a522bd
add scipy requirements
daubners Jan 15, 2025
2040e71
update tests for volume fraction
daubners Jan 16, 2025
278c562
remove cuda from volume
daubners Jan 16, 2025
b9da23c
fix tests
daubners Jan 16, 2025
96b6e94
add new surface area computation plus testing
daubners Jan 21, 2025
b9fa69e
fix cpu default
daubners Jan 21, 2025
f4ca7ab
argument order
daubners Jan 21, 2025
56a281e
add skimage
daubners Jan 21, 2025
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1 change: 1 addition & 0 deletions docs/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
numpy
torch
scipy
scikit-image
matplotlib
tifffile
myst_parser
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4 changes: 3 additions & 1 deletion requirements_dev.txt
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Expand Up @@ -13,4 +13,6 @@ matplotlib>3.6
pytest-runner==5.2
numpy>=1.24.2
tifffile==2023.2.3
myst-parser==0.18.1
myst-parser==0.18.1
scikit-image>=0.20.0
scipy>=1.3
9 changes: 8 additions & 1 deletion setup.py
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Expand Up @@ -10,7 +10,14 @@
with open('HISTORY.md') as history_file:
history = history_file.read()

requirements = ['Click>=7.0', 'numpy>=1.0', 'matplotlib>=3.4', 'tifffile>=2023.2.3']
requirements = [
'Click>=7.0',
'numpy>=1.0',
'matplotlib>=3.4',
'tifffile>=2023.2.3',
'scikit-image>=0.20.0',
'scipy>=1.3'
]

setup_requirements = ['pytest-runner', ]

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