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Remove old masking modes, add adaptive mode to mbc #189

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merged 10 commits into from
Nov 17, 2024
+209 −235
Merged

Remove old masking modes, add adaptive mode to mbc #189

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4c4c1c6
removed old masking functions
Nov 12, 2024
114fbe9
initial addition of adaptive mac and docs
Nov 13, 2024
eb9191c
added an adaptive test
Nov 13, 2024
f74fd9a
added the save_signal argument back
Nov 13, 2024
c533559
removed type
Nov 13, 2024
03918bc
added adaptive box to seed mbc calculation
Nov 13, 2024
4911e5e
typo fix
Nov 13, 2024
8ef8459
another typo fix
Nov 13, 2024
40ff100
added adaptive box to flood map
Nov 13, 2024
c626377
removed deprecated options
Nov 17, 2024
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,9 @@
- load arguments into an `BaseOptions` class from a `ArgumentParser`
- starting to move some classes over to this approaches (including some CLIs)
- Added a verify tarball function to verify archives
- Removed `suppress_artefact` and `minimum_absolute_clip` functions from
`flint.masking`
- Added an adaptive box selection mode to the minimum absolute algorithm

# 0.2.7

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3 changes: 0 additions & 3 deletions flint/data/tests/test_config.yaml
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Expand Up @@ -54,9 +54,6 @@ defaults:
flood_fill: true
flood_fill_positive_seed_clip: 4.5
flood_fill_positive_flood_clip: 1.5
suppress_artefacts: true
suppress_artefacts_negative_seed_clip: 5
suppress_artefacts_guard_negative_dilation: 40
grow_low_snr_island: true
grow_low_snr_island_clip: 1.75
grow_low_snr_island_size: 768
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3 changes: 0 additions & 3 deletions flint/data/tests/test_config_2.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -54,9 +54,6 @@ defaults:
flood_fill: true
flood_fill_positive_seed_clip: 4.5
flood_fill_positive_flood_clip: 1.5
suppress_artefacts: true
suppress_artefacts_negative_seed_clip: 5
suppress_artefacts_guard_negative_dilation: 40
grow_low_snr_island: true
grow_low_snr_island_clip: 1.75
grow_low_snr_island_size: 768
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