Remove old masking modes, add adaptive mode to mbc (#189)

* removed old masking functions * initial addition of adaptive mac and docs * added an adaptive test * added the save_signal argument back * removed type * added adaptive box to seed mbc calculation * typo fix * another typo fix * added adaptive box to flood map * removed deprecated options --------- Co-authored-by: tgalvin <[email protected]>
tjgalvin · Nov 17, 2024 · da6db25 · da6db25
1 parent 1a60787
commit da6db25
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,6 +9,9 @@
   - load arguments into an `BaseOptions` class from a `ArgumentParser`
   - starting to move some classes over to this approaches (including some CLIs)
 - Added a verify tarball function to verify archives
+- Removed `suppress_artefact` and `minimum_absolute_clip` functions from
+  `flint.masking`
+- Added an adaptive box selection mode to the minimum absolute algorithm
 
 # 0.2.7
 

diff --git a/flint/data/tests/test_config.yaml b/flint/data/tests/test_config.yaml
@@ -54,9 +54,6 @@ defaults:
     flood_fill: true
     flood_fill_positive_seed_clip: 4.5
     flood_fill_positive_flood_clip: 1.5
-    suppress_artefacts: true
-    suppress_artefacts_negative_seed_clip: 5
-    suppress_artefacts_guard_negative_dilation: 40
     grow_low_snr_island: true
     grow_low_snr_island_clip: 1.75
     grow_low_snr_island_size: 768

diff --git a/flint/data/tests/test_config_2.yaml b/flint/data/tests/test_config_2.yaml
@@ -54,9 +54,6 @@ defaults:
     flood_fill: true
     flood_fill_positive_seed_clip: 4.5
     flood_fill_positive_flood_clip: 1.5
-    suppress_artefacts: true
-    suppress_artefacts_negative_seed_clip: 5
-    suppress_artefacts_guard_negative_dilation: 40
     grow_low_snr_island: true
     grow_low_snr_island_clip: 1.75
     grow_low_snr_island_size: 768