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@Michael-E-Rose
Michael-E-Rose committed Dec 27, 2024
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2 changes: 1 addition & 1 deletion .buildinfo
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# Sphinx build info version 1
# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
config: edea708872256e073cf76793f6097e02
config: 8c615fd430af692be9ae203c435a61d6
tags: 645f666f9bcd5a90fca523b33c5a78b7
4 changes: 2 additions & 2 deletions _modules/index.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>Overview: module code &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
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<script src="../_static/jquery.js?v=5d32c60e"></script>
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12 changes: 6 additions & 6 deletions _modules/pubmed_parser/medline_parser.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pubmed_parser.medline_parser &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>pubmed_parser.medline_parser &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
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<script src="../../_static/jquery.js?v=5d32c60e"></script>
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Expand Down Expand Up @@ -655,10 +655,10 @@ <h1>Source code for pubmed_parser.medline_parser</h1><div class="highlight"><pre
<span class="n">medline</span> <span class="o">=</span> <span class="n">pubmed_article</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;MedlineCitation&quot;</span><span class="p">)</span>
<span class="n">article</span> <span class="o">=</span> <span class="n">medline</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;Article&quot;</span><span class="p">)</span>

<span class="k">if</span> <span class="n">article</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;ArticleTitle&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">title</span> <span class="o">=</span> <span class="n">stringify_children</span><span class="p">(</span><span class="n">article</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;ArticleTitle&quot;</span><span class="p">))</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">title</span> <span class="o">=</span> <span class="s2">&quot;&quot;</span>
<span class="k">try</span><span class="p">:</span>
<span class="n">title</span> <span class="o">=</span> <span class="n">stringify_children</span><span class="p">(</span><span class="n">article</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;ArticleTitle&quot;</span><span class="p">))</span> <span class="ow">or</span> <span class="kc">None</span>
<span class="k">except</span> <span class="ne">AttributeError</span><span class="p">:</span>
<span class="n">title</span> <span class="o">=</span> <span class="kc">None</span>

<span class="k">if</span> <span class="n">article</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;Journal/JournalIssue/Volume&quot;</span><span class="p">)</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">volume</span> <span class="o">=</span> <span class="n">article</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;Journal/JournalIssue/Volume&quot;</span><span class="p">)</span><span class="o">.</span><span class="n">text</span> <span class="ow">or</span> <span class="s2">&quot;&quot;</span>
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6 changes: 3 additions & 3 deletions _modules/pubmed_parser/pubmed_oa_parser.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pubmed_parser.pubmed_oa_parser &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>pubmed_parser.pubmed_oa_parser &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
<link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
<link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />


<script src="../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../_static/documentation_options.js?v=7b89ed82"></script>
<script src="../../_static/documentation_options.js?v=fbd7f65f"></script>
<script src="../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../_static/js/theme.js"></script>
Expand Down Expand Up @@ -548,7 +548,7 @@ <h1>Source code for pubmed_parser.pubmed_oa_parser</h1><div class="highlight"><p

<span class="n">fig_captions</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;caption&quot;</span><span class="p">)</span>
<span class="k">if</span> <span class="n">fig_captions</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">fig_captions</span> <span class="o">=</span> <span class="n">fig_captions</span><span class="o">.</span><span class="n">getchildren</span><span class="p">()</span>
<span class="n">fig_captions</span> <span class="o">=</span> <span class="n">fig_captions</span><span class="o">.</span><span class="n">getchildren</span><span class="p">()[:</span><span class="mi">1</span><span class="p">]</span>
<span class="n">caption</span> <span class="o">=</span> <span class="s2">&quot; &quot;</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">stringify_children</span><span class="p">(</span><span class="n">c</span><span class="p">)</span> <span class="k">for</span> <span class="n">c</span> <span class="ow">in</span> <span class="n">fig_captions</span><span class="p">])</span>

<span class="n">graphic</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">find</span><span class="p">(</span><span class="s2">&quot;graphic&quot;</span><span class="p">)</span>
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4 changes: 2 additions & 2 deletions _modules/pubmed_parser/pubmed_web_parser.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>pubmed_parser.pubmed_web_parser &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>pubmed_parser.pubmed_web_parser &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
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<script src="../../_static/jquery.js?v=5d32c60e"></script>
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2 changes: 1 addition & 1 deletion _static/documentation_options.js
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const DOCUMENTATION_OPTIONS = {
VERSION: '0.5.2.dev10+g374a336',
VERSION: '0.5.2.dev11+geaa3280',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
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4 changes: 2 additions & 2 deletions api.html
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<meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>API Documentation &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>API Documentation &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
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<script src="_static/jquery.js?v=5d32c60e"></script>
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<script src="_static/documentation_options.js?v=fbd7f65f"></script>
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<script src="_static/js/theme.js"></script>
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4 changes: 2 additions & 2 deletions genindex.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Index &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>Index &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
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<script src="_static/doctools.js?v=9bcbadda"></script>
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<script src="_static/js/theme.js"></script>
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4 changes: 2 additions & 2 deletions index.html
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<meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Pubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>Pubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
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4 changes: 2 additions & 2 deletions install.html
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<meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Installation &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>Installation &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
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4 changes: 2 additions & 2 deletions resources.html
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<meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Resources &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>Resources &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
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4 changes: 2 additions & 2 deletions search.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Search &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>Search &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=80d5e7a1" />
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<script src="_static/jquery.js?v=5d32c60e"></script>
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4 changes: 2 additions & 2 deletions spark.html
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<meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Setting up Pubmed Parser with PySpark &mdash; Pubmed Parser 0.5.2.dev10+g374a336 documentation</title>
<title>Setting up Pubmed Parser with PySpark &mdash; Pubmed Parser 0.5.2.dev11+geaa3280 documentation</title>
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