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docs/grouped__medians_8hpp_source.html

@@ -230,7 +230,7 @@
 <div class="ttc" id="anamespacetatami__stats_1_1grouped__medians_html_a6a1439fbb843b105816e5e6056193399"><div class="ttname"><a href="namespacetatami__stats_1_1grouped__medians.html#a6a1439fbb843b105816e5e6056193399">tatami_stats::grouped_medians::by_column</a></div><div class="ttdeci">std::vector&lt; std::vector&lt; Output_ &gt; &gt; by_column(const tatami::Matrix&lt; Value_, Index_ &gt; *p, const Group_ *group, const Options &amp;mopt)</div><div class="ttdef"><b>Definition</b> grouped_medians.hpp:188</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1grouped__medians_html_abbea18f8a5b281048e3eaa11104652d8"><div class="ttname"><a href="namespacetatami__stats_1_1grouped__medians.html#abbea18f8a5b281048e3eaa11104652d8">tatami_stats::grouped_medians::apply</a></div><div class="ttdeci">void apply(bool row, const tatami::Matrix&lt; Value_, Index_ &gt; *p, const Group_ *group, const GroupSizes_ &amp;group_sizes, Output_ **output, const Options &amp;mopt)</div><div class="ttdef"><b>Definition</b> grouped_medians.hpp:65</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1medians_html_ad805e96ccca9615107f7360788f24a44"><div class="ttname"><a href="namespacetatami__stats_1_1medians.html#ad805e96ccca9615107f7360788f24a44">tatami_stats::medians::direct</a></div><div class="ttdeci">Output_ direct(Value_ *ptr, Index_ num, bool skip_nan)</div><div class="ttdef"><b>Definition</b> medians.hpp:82</div></div>
-<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:17</div></div>
+<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:18</div></div>
 <div class="ttc" id="anamespacetatami__stats_html_ad46c11e3a7611f30d9695e600c5b7dd6"><div class="ttname"><a href="namespacetatami__stats.html#ad46c11e3a7611f30d9695e600c5b7dd6">tatami_stats::tabulate_groups</a></div><div class="ttdeci">std::vector&lt; Size_ &gt; tabulate_groups(const Group_ *group, Size_ n)</div><div class="ttdef"><b>Definition</b> utils.hpp:49</div></div>
 <div class="ttc" id="anamespacetatami_html_a5a08e0387bc00e8045a0364d6e35d120"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#a5a08e0387bc00e8045a0364d6e35d120">tatami::parallelize</a></div><div class="ttdeci">void parallelize(Function_ fun, Index_ tasks, int threads)</div></div>
 <div class="ttc" id="anamespacetatami_html_af05590455e558621c8ffc1b98c4fd454"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#af05590455e558621c8ffc1b98c4fd454">tatami::consecutive_extractor</a></div><div class="ttdeci">auto consecutive_extractor(const Matrix&lt; Value_, Index_ &gt; *mat, bool row, Index_ iter_start, Index_ iter_length, Args_ &amp;&amp;... args)</div></div>

docs/grouped__sums_8hpp_source.html

@@ -311,7 +311,7 @@
 <div class="ttc" id="aclasstatami_1_1Matrix_html_a69382d2a4e66cda1a9eb48dc25ab113a"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/classtatami_1_1Matrix.html#a69382d2a4e66cda1a9eb48dc25ab113a">tatami::Matrix::prefer_rows</a></div><div class="ttdeci">virtual bool prefer_rows() const=0</div></div>
 <div class="ttc" id="aclasstatami_1_1Matrix_html_af84772cc4e911a87948d45a1edcabbd0"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/classtatami_1_1Matrix.html#af84772cc4e911a87948d45a1edcabbd0">tatami::Matrix::sparse</a></div><div class="ttdeci">virtual std::unique_ptr&lt; MyopicSparseExtractor&lt; Value_, Index_ &gt; &gt; sparse(bool row, const Options &amp;opt) const=0</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1grouped__sums_html_a0dbe7d8241e5f3ea3c2403d85619aa01"><div class="ttname"><a href="namespacetatami__stats_1_1grouped__sums.html#a0dbe7d8241e5f3ea3c2403d85619aa01">tatami_stats::grouped_sums::apply</a></div><div class="ttdeci">void apply(bool row, const tatami::Matrix&lt; Value_, Index_ &gt; *p, const Group_ *group, size_t num_groups, Output_ **output, const Options &amp;sopt)</div><div class="ttdef"><b>Definition</b> grouped_sums.hpp:64</div></div>
-<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:17</div></div>
+<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:18</div></div>
 <div class="ttc" id="anamespacetatami__stats_html_ac2384fe2de19a933c735ce79f9bc1b89"><div class="ttname"><a href="namespacetatami__stats.html#ac2384fe2de19a933c735ce79f9bc1b89">tatami_stats::total_groups</a></div><div class="ttdeci">size_t total_groups(const Group_ *group, size_t n)</div><div class="ttdef"><b>Definition</b> utils.hpp:28</div></div>
 <div class="ttc" id="anamespacetatami_html_a5a08e0387bc00e8045a0364d6e35d120"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#a5a08e0387bc00e8045a0364d6e35d120">tatami::parallelize</a></div><div class="ttdeci">void parallelize(Function_ fun, Index_ tasks, int threads)</div></div>
 <div class="ttc" id="anamespacetatami_html_af05590455e558621c8ffc1b98c4fd454"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#af05590455e558621c8ffc1b98c4fd454">tatami::consecutive_extractor</a></div><div class="ttdeci">auto consecutive_extractor(const Matrix&lt; Value_, Index_ &gt; *mat, bool row, Index_ iter_start, Index_ iter_length, Args_ &amp;&amp;... args)</div></div>

docs/grouped__variances_8hpp_source.html

@@ -472,7 +472,7 @@
 <div class="ttc" id="anamespacetatami__stats_1_1grouped__variances_html_a7d36990c883e143bb7b034e45d59eb42"><div class="ttname"><a href="namespacetatami__stats_1_1grouped__variances.html#a7d36990c883e143bb7b034e45d59eb42">tatami_stats::grouped_variances::by_row</a></div><div class="ttdeci">std::vector&lt; std::vector&lt; Output_ &gt; &gt; by_row(const tatami::Matrix&lt; Value_, Index_ &gt; *p, const Group_ *group, const Options &amp;sopt)</div><div class="ttdef"><b>Definition</b> grouped_variances.hpp:435</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1grouped__variances_html_a8da66e302c25e09114cb3cd4d943c665"><div class="ttname"><a href="namespacetatami__stats_1_1grouped__variances.html#a8da66e302c25e09114cb3cd4d943c665">tatami_stats::grouped_variances::by_column</a></div><div class="ttdeci">std::vector&lt; std::vector&lt; Output_ &gt; &gt; by_column(const tatami::Matrix&lt; Value_, Index_ &gt; *p, const Group_ *group, const Options &amp;sopt)</div><div class="ttdef"><b>Definition</b> grouped_variances.hpp:491</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1grouped__variances_html_afb7e174ad083e8f081e53e5454f02a0b"><div class="ttname"><a href="namespacetatami__stats_1_1grouped__variances.html#afb7e174ad083e8f081e53e5454f02a0b">tatami_stats::grouped_variances::apply</a></div><div class="ttdeci">void apply(bool row, const tatami::Matrix&lt; Value_, Index_ &gt; *p, const Group_ *group, size_t num_groups, const Index_ *group_size, Output_ **output, const Options &amp;sopt)</div><div class="ttdef"><b>Definition</b> grouped_variances.hpp:281</div></div>
-<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:17</div></div>
+<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:18</div></div>
 <div class="ttc" id="anamespacetatami__stats_html_ad46c11e3a7611f30d9695e600c5b7dd6"><div class="ttname"><a href="namespacetatami__stats.html#ad46c11e3a7611f30d9695e600c5b7dd6">tatami_stats::tabulate_groups</a></div><div class="ttdeci">std::vector&lt; Size_ &gt; tabulate_groups(const Group_ *group, Size_ n)</div><div class="ttdef"><b>Definition</b> utils.hpp:49</div></div>
 <div class="ttc" id="anamespacetatami_html_a5a08e0387bc00e8045a0364d6e35d120"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#a5a08e0387bc00e8045a0364d6e35d120">tatami::parallelize</a></div><div class="ttdeci">void parallelize(Function_ fun, Index_ tasks, int threads)</div></div>
 <div class="ttc" id="anamespacetatami_html_af05590455e558621c8ffc1b98c4fd454"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#af05590455e558621c8ffc1b98c4fd454">tatami::consecutive_extractor</a></div><div class="ttdeci">auto consecutive_extractor(const Matrix&lt; Value_, Index_ &gt; *mat, bool row, Index_ iter_start, Index_ iter_length, Args_ &amp;&amp;... args)</div></div>

docs/medians_8hpp_source.html

@@ -326,7 +326,7 @@
 <div class="ttc" id="anamespacetatami__stats_1_1medians_html_ad8b353fbe53c1168d241ac90d392ab67"><div class="ttname"><a href="namespacetatami__stats_1_1medians.html#ad8b353fbe53c1168d241ac90d392ab67">tatami_stats::medians::apply</a></div><div class="ttdeci">void apply(bool row, const tatami::Matrix&lt; Value_, Index_ &gt; *p, Output_ *output, const medians::Options &amp;mopt)</div><div class="ttdef"><b>Definition</b> medians.hpp:226</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1medians_html_aec4803eb6b9ba02620a0dd349ea06119"><div class="ttname"><a href="namespacetatami__stats_1_1medians.html#aec4803eb6b9ba02620a0dd349ea06119">tatami_stats::medians::by_row</a></div><div class="ttdeci">std::vector&lt; Output_ &gt; by_row(const tatami::Matrix&lt; Value_, Index_ &gt; *p, const Options &amp;mopt)</div><div class="ttdef"><b>Definition</b> medians.hpp:310</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1medians_html_afe65c01afef3d0dc617a600b4918ae60"><div class="ttname"><a href="namespacetatami__stats_1_1medians.html#afe65c01afef3d0dc617a600b4918ae60">tatami_stats::medians::by_column</a></div><div class="ttdeci">std::vector&lt; Output_ &gt; by_column(const tatami::Matrix&lt; Value_, Index_ &gt; *p, const Options &amp;mopt)</div><div class="ttdef"><b>Definition</b> medians.hpp:273</div></div>
-<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:17</div></div>
+<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:18</div></div>
 <div class="ttc" id="anamespacetatami_html_a5a08e0387bc00e8045a0364d6e35d120"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#a5a08e0387bc00e8045a0364d6e35d120">tatami::parallelize</a></div><div class="ttdeci">void parallelize(Function_ fun, Index_ tasks, int threads)</div></div>
 <div class="ttc" id="anamespacetatami_html_ab52a806e3f13a68741a9e1f77dccab14"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#ab52a806e3f13a68741a9e1f77dccab14">tatami::copy_n</a></div><div class="ttdeci">Value_ * copy_n(const Value_ *input, Size_ n, Value_ *output)</div></div>
 <div class="ttc" id="anamespacetatami_html_af05590455e558621c8ffc1b98c4fd454"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#af05590455e558621c8ffc1b98c4fd454">tatami::consecutive_extractor</a></div><div class="ttdeci">auto consecutive_extractor(const Matrix&lt; Value_, Index_ &gt; *mat, bool row, Index_ iter_start, Index_ iter_length, Args_ &amp;&amp;... args)</div></div>

docs/ranges_8hpp_source.html

@@ -481,7 +481,7 @@
 <div class="ttc" id="anamespacetatami__stats_1_1ranges_html_a7c7085e3a6cd07db268d44d9a137d6ce"><div class="ttname"><a href="namespacetatami__stats_1_1ranges.html#a7c7085e3a6cd07db268d44d9a137d6ce">tatami_stats::ranges::direct</a></div><div class="ttdeci">Value_ direct(const Value_ *ptr, Index_ num, bool skip_nan)</div><div class="ttdef"><b>Definition</b> ranges.hpp:97</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1ranges_html_a9dda92fd59e897fb2d58f8197ff645bc"><div class="ttname"><a href="namespacetatami__stats_1_1ranges.html#a9dda92fd59e897fb2d58f8197ff645bc">tatami_stats::ranges::by_column</a></div><div class="ttdeci">std::pair&lt; std::vector&lt; Output_ &gt;, std::vector&lt; Output_ &gt; &gt; by_column(const tatami::Matrix&lt; Value_, Index_ &gt; *p, const Options &amp;ropt)</div><div class="ttdef"><b>Definition</b> ranges.hpp:467</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1ranges_html_ae6a6bab18f4f4f19e5f11850ea6691c7"><div class="ttname"><a href="namespacetatami__stats_1_1ranges.html#ae6a6bab18f4f4f19e5f11850ea6691c7">tatami_stats::ranges::apply</a></div><div class="ttdeci">void apply(bool row, const tatami::Matrix&lt; Value_, Index_ &gt; *p, Output_ *min_out, Output_ *max_out, const Options &amp;ropt)</div><div class="ttdef"><b>Definition</b> ranges.hpp:342</div></div>
-<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:17</div></div>
+<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:18</div></div>
 <div class="ttc" id="anamespacetatami_html_a5a08e0387bc00e8045a0364d6e35d120"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#a5a08e0387bc00e8045a0364d6e35d120">tatami::parallelize</a></div><div class="ttdeci">void parallelize(Function_ fun, Index_ tasks, int threads)</div></div>
 <div class="ttc" id="anamespacetatami_html_af05590455e558621c8ffc1b98c4fd454"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#af05590455e558621c8ffc1b98c4fd454">tatami::consecutive_extractor</a></div><div class="ttdeci">auto consecutive_extractor(const Matrix&lt; Value_, Index_ &gt; *mat, bool row, Index_ iter_start, Index_ iter_length, Args_ &amp;&amp;... args)</div></div>
 <div class="ttc" id="astructtatami_1_1Options_html"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/structtatami_1_1Options.html">tatami::Options</a></div></div>

docs/sums_8hpp_source.html

@@ -335,7 +335,7 @@
 <div class="ttc" id="anamespacetatami__stats_1_1sums_html_ae21d4cc4dfbc7002e3dd57b1eb6047a6"><div class="ttname"><a href="namespacetatami__stats_1_1sums.html#ae21d4cc4dfbc7002e3dd57b1eb6047a6">tatami_stats::sums::apply</a></div><div class="ttdeci">void apply(bool row, const tatami::Matrix&lt; Value_, Index_ &gt; *p, Output_ *output, const Options &amp;sopt)</div><div class="ttdef"><b>Definition</b> sums.hpp:207</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1sums_html_aef91d6bb0a5132934e63bb2d4844e78d"><div class="ttname"><a href="namespacetatami__stats_1_1sums.html#aef91d6bb0a5132934e63bb2d4844e78d">tatami_stats::sums::by_row</a></div><div class="ttdeci">std::vector&lt; Output_ &gt; by_row(const tatami::Matrix&lt; Value_, Index_ &gt; *p, const Options &amp;sopt)</div><div class="ttdef"><b>Definition</b> sums.hpp:324</div></div>
 <div class="ttc" id="anamespacetatami__stats_1_1sums_html_af95ccf6d0eea5492a7ccd6c1c003df92"><div class="ttname"><a href="namespacetatami__stats_1_1sums.html#af95ccf6d0eea5492a7ccd6c1c003df92">tatami_stats::sums::direct</a></div><div class="ttdeci">Output_ direct(const Value_ *ptr, Index_ num, bool skip_nan)</div><div class="ttdef"><b>Definition</b> sums.hpp:57</div></div>
-<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:17</div></div>
+<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:18</div></div>
 <div class="ttc" id="anamespacetatami_html_a5a08e0387bc00e8045a0364d6e35d120"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#a5a08e0387bc00e8045a0364d6e35d120">tatami::parallelize</a></div><div class="ttdeci">void parallelize(Function_ fun, Index_ tasks, int threads)</div></div>
 <div class="ttc" id="anamespacetatami_html_af05590455e558621c8ffc1b98c4fd454"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/namespacetatami.html#af05590455e558621c8ffc1b98c4fd454">tatami::consecutive_extractor</a></div><div class="ttdeci">auto consecutive_extractor(const Matrix&lt; Value_, Index_ &gt; *mat, bool row, Index_ iter_start, Index_ iter_length, Args_ &amp;&amp;... args)</div></div>
 <div class="ttc" id="astructtatami_1_1Options_html"><div class="ttname"><a href="https://tatami-inc.github.io/tatami/structtatami_1_1Options.html">tatami::Options</a></div></div>

docs/tatami__stats_8hpp_source.html

@@ -111,7 +111,7 @@
 <div class="ttc" id="agrouped__sums_8hpp_html"><div class="ttname"><a href="grouped__sums_8hpp.html">grouped_sums.hpp</a></div><div class="ttdoc">Compute group-wise sums from a tatami::Matrix.</div></div>
 <div class="ttc" id="agrouped__variances_8hpp_html"><div class="ttname"><a href="grouped__variances_8hpp.html">grouped_variances.hpp</a></div><div class="ttdoc">Compute group-wise variances from a tatami::Matrix.</div></div>
 <div class="ttc" id="amedians_8hpp_html"><div class="ttname"><a href="medians_8hpp.html">medians.hpp</a></div><div class="ttdoc">Compute row and column medians from a tatami::Matrix.</div></div>
-<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:17</div></div>
+<div class="ttc" id="anamespacetatami__stats_html"><div class="ttname"><a href="namespacetatami__stats.html">tatami_stats</a></div><div class="ttdoc">Functions to compute statistics from a tatami::Matrix.</div><div class="ttdef"><b>Definition</b> counts.hpp:18</div></div>
 <div class="ttc" id="aranges_8hpp_html"><div class="ttname"><a href="ranges_8hpp.html">ranges.hpp</a></div><div class="ttdoc">Compute row and column ranges from a tatami::Matrix.</div></div>
 <div class="ttc" id="asums_8hpp_html"><div class="ttname"><a href="sums_8hpp.html">sums.hpp</a></div><div class="ttdoc">Compute row and column sums from a tatami::Matrix.</div></div>
 <div class="ttc" id="autils_8hpp_html"><div class="ttname"><a href="utils_8hpp.html">utils.hpp</a></div><div class="ttdoc">Utilities for computing matrix statistics.</div></div>