.travis.yml

sudo: required
services:
  - docker

before_install:
  # - docker pull biocorecrg/vast-tools
  docker build -t vast-tools .

install:  
  # Install library
  - mkdir ${TRAVIS_BUILD_DIR}/db
  - cd ${TRAVIS_BUILD_DIR}/db
  - travis_wait 30 wget -c -t0 -o /dev/null http://vastdb.crg.eu/libs/vastdb.hsa.16.02.18.tar.gz
  - travis_wait tar zxf vastdb.hsa.16.02.18.tar.gz
  - rm vastdb.hsa.16.02.18.tar.gz
  # In & out directory
  - mkdir -p ${TRAVIS_BUILD_DIR}/share/reads
  - cp ${TRAVIS_BUILD_DIR}/tests/data/NewFQ_Test_Hsa-51/NewFQ_Test_Hsa-51.fq.gz ${TRAVIS_BUILD_DIR}/share/reads
  - mkdir -p ${TRAVIS_BUILD_DIR}/share/out

script:
  # Run docker
  - docker run -d -v ${TRAVIS_BUILD_DIR}/db:/VASTDB -v ${TRAVIS_BUILD_DIR}/share:/share --name myvast vast-tools tail -f /dev/null
  - docker exec myvast vast-tools align /share/reads/NewFQ_Test_Hsa-51.fq.gz -sp Hsa --expr -o /share/out/test
  - bash ${TRAVIS_BUILD_DIR}/tests/tests.sh ${TRAVIS_BUILD_DIR}/tests/data ${TRAVIS_BUILD_DIR}/share/out/test