Data Dictionary Exporter (#204)

* Use shr-data-dict-export

* Change output of data dictionary export to output directory

* Rebase and fix package.json dependencies

* v5.20.0

README.md

@@ -37,7 +37,7 @@ $ node . --help
 
     -l, --log-level <level>  the console log level <fatal,error,warn,info,debug,trace> (default: info)
     -m, --log-mode <mode>    the console log mode <short,long,json,off> (default: short)
-    -s, --skip <feature>     skip an export feature <fhir,json,cimcore,json-schema,es6,model-doc,all> (default: <none>)
+    -s, --skip <feature>     skip an export feature <fhir,json,cimcore,json-schema,es6,model-doc,data-dict,all> (default: <none>)
     -a, --adl                run the adl exporter (default: false)
     -o, --out <out>          the path to the output folder (default: out)
     -c, --config <config>    the name of the config file (default: config.json)

app.js

@@ -13,6 +13,7 @@ const shrEE = require('shr-es6-export');
 const shrFE = require('shr-fhir-export');
 const shrJDE = require('shr-json-javadoc');
 const shrAE = require('shr-adl-bmm-export');
+const shrDD = require('shr-data-dict-export');
 const LogCounter = require('./logcounter');
 const SpecificationsFilter = require('./filter');
 
@@ -33,7 +34,7 @@ program
   .usage('<path-to-shr-defs> [options]')
   .option('-l, --log-level <level>', 'the console log level <fatal,error,warn,info,debug,trace>', /^(fatal|error|warn|info|debug|trace)$/i, 'info')
   .option('-m, --log-mode <mode>', 'the console log mode <short,long,json,off>', /^(short|long|json|off)$/i, 'short')
-  .option('-s, --skip <feature>', 'skip an export feature <fhir,json,cimcore,json-schema,es6,model-doc,all>', collect, [])
+  .option('-s, --skip <feature>', 'skip an export feature <fhir,json,cimcore,json-schema,es6,model-doc,data-dict,all>', collect, [])
   .option('-a, --adl', 'run the adl exporter (default: false)')
   .option('-o, --out <out>', `the path to the output folder`, path.join('.', 'out'))
   .option('-c, --config <config>', 'the name of the config file', 'config.json')
@@ -58,6 +59,7 @@ const doJSONSchema = program.skip.every(a => a.toLowerCase() != 'json-schema' &&
 const doES6 = program.skip.every(a => a.toLowerCase() != 'es6' && a.toLowerCase() != 'all');
 const doModelDoc = program.skip.every(a => a.toLowerCase() != 'model-doc' && a.toLowerCase() != 'all');
 const doCIMCORE = program.skip.every(a => a.toLowerCase() != 'cimcore' && a.toLowerCase() != 'all');
+const doDD = program.skip.every(a => a.toLowerCase() != 'data-dict' && a.toLowerCase() != 'all');
 
 // Process the ADL flag
 const doADL = program.adl;
@@ -113,6 +115,9 @@ if (doADL) {
 if (doES6) {
   shrEE.setLogger(logger.child({ module: 'shr-es6-export'}));
 }
+if (doDD) {
+  shrDD.setLogger(logger.child({ module: 'shr-data-dict-export'}));
+}
 
 // Go!
 logger.info('Starting CLI Import/Export');
@@ -249,6 +254,18 @@ if (doCIMCORE) {
   logger.info('Skipping CIMCORE export');
 }
 
+if (doDD) {
+  try {
+    const hierarchyPath = path.join(program.out, 'data-dictionary');
+    shrDD.generateDDtoPath(expSpecifications, configSpecifications, hierarchyPath);
+  } catch (error) {
+    logger.fatal('Failure in Data Dictionary export. Aborting with error message: %s', error);
+    failedExports.push('shr-data-dict-export');
+  }
+} else {
+  logger.info('Skipping Data Dictionary export');
+}
+
 if (doADL) {
   try {
     shrAE.generateADLtoPath(expSpecifications, configSpecifications, program.out);

package.json

@@ -1,6 +1,6 @@
 {
   "name": "shr-cli",
-  "version": "5.19.1",
+  "version": "5.20.0",
   "description": "Command-line interface for SHR tools",
   "author": "",
   "license": "Apache-2.0",
@@ -23,6 +23,7 @@
     "fs-extra": "^7.0.0",
     "mkdirp": "^0.5.1",
     "shr-adl-bmm-export": "^1.0.1",
+    "shr-data-dict-export": "^5.0.0",
     "shr-es6-export": "^5.7.2",
     "shr-expand": "^5.8.1",
     "shr-fhir-export": "^5.14.2",

rebuild-all

@@ -50,6 +50,11 @@ echo "================= shr-adl-bmm-export =================="
 rm -rf node_modules
 yarn
 
+cd ../shr-data-dict-export
+echo "================ shr-data-dict-export ================="
+rm -rf node_modules
+yarn
+
 cd ../shr-cli
 echo "===================== shr-cli ======================"
 rm -rf node_modules

yarn-link-all

@@ -58,6 +58,11 @@ cd ../shr-adl-bmm-export
 echo "=============== shr-adl-bmm-export ================="
 yarn link
 
+cd ../shr-data-dict-export
+echo "============== shr-data-dict-export ================"
+yarn link shr-models
+yarn link
+
 cd ../shr-cli
 echo "===================== shr-cli ======================"
 yarn link shr-models
@@ -69,3 +74,4 @@ yarn link shr-json-javadoc
 yarn link shr-es6-export
 yarn link shr-fhir-export
 yarn link shr-adl-bmm-export
+yarn link shr-data-dict-export

yarn-unlink-all

@@ -7,10 +7,16 @@ yarn unlink shr-es6-export
 yarn unlink shr-json-schema-export
 yarn unlink shr-json-export
 yarn unlink shr-json-javadoc
+yarn unlink shr-data-dict-export
 yarn unlink shr-text-import
 yarn unlink shr-expand
 yarn unlink shr-models
 
+cd ../shr-data-dict-export
+echo "============== shr-data-dict-export ================"
+yarn unlink shr-models
+yarn unlink
+
 cd ../shr-adl-bmm-export
 echo "=============== shr-adl-bmm-export ================="
 yarn unlink