This tool requires Java (at least version 1.8) to be installed.
To cluster your MGF files, simply extract the files from this zip and execute (on the command line):
$ java -jar spectra-cluster-cli-1.1.2.jar -filter immonium_ions -output_path my_clustering_result.clustering C:\my_first_file.mgf C:\my_second_file.mgf
Version 1.1.2
- Fixed a bug that caused a crash when re-binning very small datasets
with scarce m/z regions.