RefineNestedAccess take indices into account when checking for missing free symbols #2582

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Run time

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Job	Run time
test (3.7, 0)	35m 41s
test (3.7, 1)	40m 43s
test (3.7, autoopt)	38m 18s
test (3.11, 0)	37m 5s
test (3.11, 1)	41m 45s
test (3.11, autoopt)	45m 20s
	3h 58m 52s