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@softmaterialslab

Soft Matters at the Nanoscale

Repositories of ongoing projects in the area of soft-matter simulation at the nanoscale.

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  1. capsid-souffle capsid-souffle Public

    Jupyter Notebook 4

  2. np-shape-lab np-shape-lab Public

    The shape of nanoparticles determines their ability to interact with biological systems in nanomedicine applications. This framework simulates the shape deformation of deformable patchy nanoparticl…

    Mathematica 1 8

  3. mlflow mlflow Public

    Jupyter Notebook 1 2

  4. np-assembly-lab np-assembly-lab Public

    Simulates assembly of nanoparticles and oppositely-charged linkers under different physiological conditions. Outputs are structural information such as pair distribution functions.

    Jupyter Notebook 11

  5. nanoconfinement-md nanoconfinement-md Public

    This code allows users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.

    Jupyter Notebook 5 13

  6. bnsl bnsl Public

    Simualtes the assembly of binary nanoparticle superlattices (BNSL)

    C++ 5

Repositories

Showing 10 of 14 repositories
  • jadhaolab-website Public

    Jadhao Lab Website

    softmaterialslab/jadhaolab-website’s past year of commit activity
    CSS 0 Apache-2.0 0 0 0 Updated Oct 22, 2024
  • np-assembly-lab Public

    Simulates assembly of nanoparticles and oppositely-charged linkers under different physiological conditions. Outputs are structural information such as pair distribution functions.

    softmaterialslab/np-assembly-lab’s past year of commit activity
    Jupyter Notebook 0 11 2 7 Updated Aug 28, 2024
  • mlflow Public
    softmaterialslab/mlflow’s past year of commit activity
    Jupyter Notebook 1 2 0 0 Updated Apr 1, 2024
  • nanoconfinement-md Public

    This code allows users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.

    softmaterialslab/nanoconfinement-md’s past year of commit activity
    Jupyter Notebook 5 Apache-2.0 13 9 8 Updated Nov 11, 2023
  • energyINsights Public
    softmaterialslab/energyINsights’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 1, 2023
  • nanobind Public

    polyvalent nanoparticle binding simulator

    softmaterialslab/nanobind’s past year of commit activity
    Jupyter Notebook 1 5 0 7 Updated Apr 12, 2023
  • bnsl Public

    Simualtes the assembly of binary nanoparticle superlattices (BNSL)

    softmaterialslab/bnsl’s past year of commit activity
    C++ 0 5 0 7 Updated Apr 12, 2023
  • capsid-souffle Public
    softmaterialslab/capsid-souffle’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 4 1 0 Updated Jun 23, 2022
  • np-shape-lab Public

    The shape of nanoparticles determines their ability to interact with biological systems in nanomedicine applications. This framework simulates the shape deformation of deformable patchy nanoparticles for a broad variety of nanoparticle material properties and solution conditions. Molecular dynamics based simulated annealing is used to minimize t…

    softmaterialslab/np-shape-lab’s past year of commit activity
    Mathematica 1 BSD-3-Clause 8 6 1 Updated Sep 24, 2021
  • autoparasweep Public
    softmaterialslab/autoparasweep’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Mar 17, 2021
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