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HMRs for replicates should be able to read tabular format
enhancement
New feature or request
#9
opened Jul 7, 2022 by
andrewdavidsmith
updated Oct 16, 2022
radmeth adjust outputs -1-1 in 7th field
#10
opened Jul 7, 2022 by
guilhermesena1
updated Oct 16, 2022
Radmeth Merge DMR Criterion
question
Further information is requested
#13
opened Feb 12, 2020 by
SDeans0
updated Oct 16, 2022
the entropy values of all CpG sites were negative
#15
opened Jan 26, 2022 by
vanessayang0927
updated Oct 16, 2022
amrfinder eliminate_amrs_by_size
enhancement
New feature or request
question
Further information is requested
#16
opened Jul 30, 2014 by
bdecato
updated Oct 16, 2022
Update PMD documentation to specify expected array input
#20
opened Jul 5, 2022 by
guilhermesena1
updated Oct 16, 2022
roimethstat seems not be able to identify overlapping region
#21
opened Jan 24, 2022 by
kyliuae
updated Oct 16, 2022
sensible output from levels command when run on symmetric CpG counts files
question
Further information is requested
#27
opened Nov 2, 2022 by
andrewdavidsmith
updated Nov 2, 2022
SYM - collapsing counts for other methylation context
enhancement
New feature or request
#41
opened May 11, 2023 by
olaraym
updated May 11, 2023
radmeth-adjust replaces significant p-values in scientific notation with '1' and thus hides best DMC
#31
opened Feb 17, 2023 by
iromeo
updated Jul 12, 2023
hmr requires symmetric data, fails on lifted over .meth files
#43
opened Jun 17, 2023 by
faulk-lab
updated Aug 23, 2023
selectsites failing with poor message on unsorted sites processed on disk
#123
opened Aug 31, 2023 by
andrewdavidsmith
updated Aug 31, 2023
roi should check for input files before reporting any problems with arguments
good first issue
Good for newcomers
#154
opened Sep 30, 2023 by
andrewdavidsmith
updated Sep 30, 2023
mlml "error: chrom or pos mismatch in both files"
#135
opened Sep 12, 2023 by
christianwake
updated Oct 5, 2023
Are there any parameters that need to be tuned for mapping WGBS data to repeat regions?
#248
opened Oct 23, 2024 by
QianhuiWan
updated Oct 30, 2024
The hmr command fails when methylation levels are at extremes
bug
Something isn't working
#251
opened Nov 17, 2024 by
andrewdavidsmith
updated Nov 17, 2024
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