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Welcome to the Spritz wiki!

Software for RNA-Seq analysis on Windows, including creating sample-specific proteoform databases from genomic data

Spritz uses snakemake and Docker to install and run commandline tools for Next-Generation Sequencing (NGS) analysis.

Spritz can be downloaded here.

Running Spritz with GUI

1. Install Docker Desktop for Windows.

2. Under Docker Settings, enable C and other necessary drives and allocate sufficient resources (recommended 16GB).

   

3. Launch Spritz.

   

   Step 1: Input SRA accessions OR FASTQ files.

   Step 2: Create and customize your Spritz workflow.

   

   Step 3: Run Spritz!

Test it out! Try constructing the database for U2OS from the paper.

1. Add SRR629563 to the SRA list.

2. Create the Spritz workflow. Select "release-82" and "homo_sapiens."

3. Run Spritz!