Improved GUI and several bug fixes

Merge pull request #374 from acesnik/master

ET/EE relation table filters; stepthrough info button

Improved automatic assignments

Merge pull request #348 from acesnik/master

Reworked exp. proteoform identification; variable methionine oxidation; ET improvements

Automatic identification of experimental proteoforms

This allows output of a nice dataframe of identified and quantified proteoforms with the results summary.

Gene-centric proteoform family construction

Merge pull request #327 from acesnik/master

Gene-centric proteoform families

Faster unlabeled analysis & allow GO term analysis for GPTMD

• Fixed overflow issues for GO Term analysis using GPTMD database
• Large speedup for unlabeled anaylsis
• Allows moving experimental nodes that weren't quantified in cytoscape viz

GO term analysis fixes

0.1.9

Reaggregation now runs through the rest of the pipeline.

ProteoformFamily and imputation bug fixes. Speedup (6x) in TheoreticalDatabase.

0.1.8

Compute background standard deviation with selected proteoform intens…

Revised quantitation & allowed GPTMD protein databases with multiple ptmlists

Using mzLib & allow multiple databases including GPTMD

* Implemented mzLib methods for reading databases
* Restructured LoadDeconvolution to allow three load DGVs
* Allows multiple databases
* Can read GPTMD databases created in MetaMorpheus

Speedups and Quantitation Update

0.1.6

Small fixes to LDR GUI page

Removed missed monoisotopics and harmonics

Among other changes, including some GUI functionality.