Construction of proteoform families in top-down data

0.3.0

display exp proteoform

GO Term and Modification tables in full export

Merge pull request #451 from acesnik/master

add unlocalized mod table to full export

Export all datatables, including those not loaded in DGVs

Merge pull request #447 from acesnik/master

Use DataTables for exporting to Excel instead of DGVs

Fix for intensity dataframe crash

Merge pull request #444 from acesnik/master

bug fix in making intensity dataframes

Fix for identifying amino acid loss; permutation fold change allowances

Merge pull request #443 from acesnik/master

Bug fix for identifying amino acid loss; simplified identification code slightly; tests for identifying proteoforms

Improvements to imputation and speed with decoy databases

• speed improvements for more than 1 decoy database
• use unrounded intensities for background distribution calculations

Quantification improvements

Implemented improved Tusher analysis

GUI improvements; fixes to nomansland and EF relation criteria

Merge pull request #410 from acesnik/master

Adjustments for higher and lower screen resolutions...

Control over unlocalized modifications and more

Merge pull request #399 from acesnik/master

Modifiable PTM ranks, used in pf assignment. CH2/HPO3 for no-mans-land calculations

Proteoform FDR; Cytoscape scripting improvements

Merge pull request #392 from acesnik/master

Changed default cytoscape script colors