FastPathology macOS 12 #27
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| name: FastPathology macOS 11 | |
| on: | |
| workflow_dispatch: | |
| env: | |
| BUILD_TYPE: Release | |
| MACOSX_DEPLOYMENT_TARGET: 10.13 | |
| jobs: | |
| build: | |
| runs-on: macos-11 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install dependencies | |
| run: | | |
| brew install openslide | |
| # Install a specific version of libomp (14.0.6) since newer versions fail with cmake | |
| curl https://raw.githubusercontent.com/Homebrew/homebrew-core/c87d6a0c8360c4684e3375ce6c4576214acdd71b/Formula/libomp.rb > $(find $(brew --repository) -name libomp.rb) && brew reinstall libomp | |
| - name: Configure CMake | |
| run: | | |
| cmake -B ${{github.workspace}}/build \ | |
| -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}}\ | |
| -DFAST_MODULE_OpenVINO=ON \ | |
| -DFAST_MODULE_Dicom=OFF \ | |
| -DFAST_MODULE_WholeSlideImaging=ON \ | |
| -DFAST_MODULE_OpenIGTLink=OFF \ | |
| -DFAST_MODULE_Clarius=OFF \ | |
| -DFAST_MODULE_TensorFlow=ON \ | |
| -DFAST_MODULE_HDF5=ON \ | |
| -DFAST_MODULE_Plotting=ON \ | |
| -DFAST_MODULE_Python=OFF \ | |
| -DFAST_MODULE_RealSense=OFF \ | |
| -DFAST_BUILD_EXAMPLES=OFF \ | |
| -DFAST_BUILD_TESTS=ON \ | |
| - name: Build | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -j 4 | |
| - name: Package | |
| run: | | |
| cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} --target package -j 4 | |
| mv ${{github.workspace}}/build/fast_*.tar.xz ${{github.workspace}}/build/fast_macos10.13.tar.xz | |
| - name: Upload archive package | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: Archive package (tar.xz) | |
| path: ${{github.workspace}}/build/fast_*.tar.xz | |
| if-no-files-found: error | |
| - name: Upload package to external repo release | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_name: AICAN-Research/FAST-Pathology-dependencies | |
| repo_token: ${{ secrets.FAST_PATHOLOGY_PUSH_TOKEN }} | |
| file: ${{github.workspace}}/build/fast_*.tar.xz | |
| asset_name: fast_macos10.13.tar.xz | |
| file_glob: true | |
| tag: v1.0.0 | |
| overwrite: true | |
| test-cpp: | |
| name: Run C++ Tests | |
| needs: [build] | |
| runs-on: [self-hosted, macos] | |
| steps: | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: 'Archive package (tar.xz)' | |
| path: ${{github.workspace}}/download/ | |
| - name: Extract artifact | |
| run: | | |
| mkdir -p ${{github.workspace}}/download/ | |
| cd ${{github.workspace}}/download/ | |
| tar -xf fast_*.tar.xz -C ${{github.workspace}} | |
| - name: Download test data | |
| run: | | |
| cd ${{github.workspace}} | |
| cd fast* | |
| cd fast/bin/ | |
| ./downloadTestData | |
| - name: Run tests | |
| run: | | |
| cd ${{github.workspace}} | |
| cd fast_* | |
| cd fast/bin/ | |
| ./testFAST ~[visual]~[unstablemac] | |
| - name: Cleanup | |
| if: always() | |
| run: | | |
| rm -Rf ${{github.workspace}} | |
| rm -Rf $HOME/FAST/kernel_binaries/* |