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1. cgs-local-ancestry cgs-local-ancestry Public

   Local ancestry analysis pipeline for Stanford Clinical Genome Service and Undiagnosed Disease Network

   Perl 2 2

2. EPI-EMMAX EPI-EMMAX Public

   Modified version of EMMAX for GxG interactions and other improvements

   C 1

3. rfmix rfmix Public

   RFMIX - Local Ancestry and Admixture Inference Version 2

   C++ 79 25

4. admixture-simulation admixture-simulation Public

   Simulates admixed individuals from "pure ancestry" individuals using Wright-Fisher forward model

   Python 7

5. out-of-africa-model out-of-africa-model Public

   Simulates a single full chromosome of the human genome for the Out of Africa model described in Gravel et al. 2011 PNAS

   Python 1

6. variant-server variant-server Public

   A simple web-based service to return JSON objects describing known and predicted effects of genetic variants

   Shell 1 1