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[python] Update the MultiscaleImage to match somacore API changes #3262

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[python] Update the MultiscaleImage to match somacore API changes #3262

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9fd1401
Update somacore version for Python API and pre-commit
jp-dark Oct 28, 2024
353ee96
(WIP) Update the multiscale image
jp-dark Oct 29, 2024
1ec23cd
Update Visium ingestion MultiscaleImage
jp-dark Oct 29, 2024
4f43c1e
(WIP) More work on the multiscale image
jp-dark Oct 29, 2024
cc72a4f
(WIP) Update/fix multiscale image tests
jp-dark Oct 29, 2024
348d264
Fix type ignore comments and get transform methods
jp-dark Oct 30, 2024
b71bee0
Fix process_image_region coord construction
jp-dark Oct 30, 2024
866cf7d
Clean-up and fix tests
jp-dark Oct 30, 2024
b25f72c
Update args in Scene add_multiscale_image tests
jp-dark Oct 30, 2024
8878e1b
Update spatial notebook
jp-dark Oct 30, 2024
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2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
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Expand Up @@ -18,7 +18,7 @@ repos:
# Pandas 2.x types (e.g. `pd.Series[Any]`). See `_types.py` or https://github.com/single-cell-data/TileDB-SOMA/issues/2839
# for more info.
- "pandas-stubs>=2"
- "somacore==1.0.22"
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Do NOT merge until this is updated.

- "somacore @ git+https://github.com/single-cell-data/SOMA.git@08b795e" # DO NOT MERGE
- types-setuptools
args: ["--config-file=apis/python/pyproject.toml", "apis/python/src", "apis/python/devtools"]
pass_filenames: false
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