Reseting somacore version to the latest

single-cell-data · Jan 19, 2024 · f4c16e1 · f4c16e1
1 parent ac38935
commit f4c16e1
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Showing 4 changed files with 2 additions and 9 deletions.
diff --git a/.github/workflows/r-python-interop-testing.yml b/.github/workflows/r-python-interop-testing.yml
@@ -59,9 +59,6 @@ jobs:
           FILE=$(ls -1t *.tar.gz | head -n 1)
           R CMD INSTALL $FILE
 
-      - name: Install tiledb
-        run: Rscript -e 'remotes::install_version("tiledb", "0.22.0")'
-
       - name: Show R package versions
         run: Rscript -e 'tiledbsoma::show_package_versions()'
 

diff --git a/apis/python/setup.py b/apis/python/setup.py
@@ -40,7 +40,6 @@
 
 import version  # noqa E402
 
-
 # tiledb_dir and libtiledbsoma_dir may be specified by either environment variable
 # or command-line argument. If both are provided, the latter wins.
 
@@ -296,9 +295,6 @@ def run(self):
         "scipy",
         "somacore==1.0.7",
         "tiledb~=0.25.0",
-        # "somacore==1.0.4", # temporarily change for this PR! TODO will be reversed before landing
-        "somacore @ git+https://github.com/single-cell-data/SOMA.git@b47bbc87f6fa37aed6a7b30c3ac0ddca4bc9fc6c",
-        "tiledb~=0.24.0",
         "typing-extensions",  # Note "-" even though `import typing_extensions`
     ],
     extras_require={

diff --git a/apis/python/src/tiledbsoma/_experiment.py b/apis/python/src/tiledbsoma/_experiment.py
@@ -76,7 +76,6 @@ def _set_create_metadata(cls, handle: Wrapper[Any]) -> None:
         handle.metadata["dataset_type"] = "soma"
         return super()._set_create_metadata(handle)
 
-    # in tiledbsoma
     def axis_query(  # type: ignore
         self,
         measurement_name: str,

diff --git a/libtiledbsoma/src/reindexer/example.py b/libtiledbsoma/src/reindexer/example.py
@@ -18,4 +18,5 @@ def main():
     print(f"End to end time {t2 - t1}")
 
 
-main()
+if __name__ == "__main__":
+    main()