TileDB-SOMA 1.14.5 #573
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| #push: | |
| # # To publish docs from your branch: list the branch name here instead of main. | |
| # branches: [main] | |
| #pull_request: | |
| # # To publish docs from your branch: list the branch name here instead of main. | |
| # branches: [main] | |
| release: | |
| types: [published] | |
| schedule: | |
| - cron: "42 9 * * *" | |
| workflow_dispatch: | |
| name: pkgdown | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| # This is GitHub Actions magic -- there are no secrets we as package owners need to set up or manage | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| with: | |
| working-directory: "apis/r" | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| working-directory: "apis/r" | |
| - name: Set additional repositories (macOS) | |
| if: ${{ matrix.os != 'ubuntu-latest' }} | |
| run: echo 'options(repos = c("https://tiledb-inc.r-universe.dev", getOption("repos")), timeout = 300L)' | tee -a ~/.Rprofile | |
| - name: Set additional repositories (Linux) | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| rversion <- paste(strsplit(as.character(getRversion()), split = '\\.')[[1L]][1:2], collapse = '.') | |
| codename <- system('. /etc/os-release; echo ${VERSION_CODENAME}', intern = TRUE) | |
| repo <- "https://tiledb-inc.r-universe.dev" | |
| (opt <- sprintf('options(repos = c("%s/bin/linux/%s/%s", "%s", getOption("repos")), timeout = 300L)', repo, codename, rversion, repo)) | |
| cat(opt, "\n", file = "~/.Rprofile", append = TRUE) | |
| shell: Rscript {0} | |
| - name: Install tiledb-r | |
| run: cd apis/r && Rscript tools/install-tiledb-r.R | |
| # Run this daily to surface errors as tracked at | |
| # https://github.com/single-cell-data/TileDB-SOMA/issues/2052 | |
| - name: Install dependencies | |
| run: ./apis/r/tools/install-pkgdown-dependencies.sh | |
| # Run this on releases, or on workflow dispatch | |
| - name: Deploy package | |
| if: github.event_name != 'schedule' | |
| run: ./apis/r/tools/deploy-pkgdown.sh |