updates render action #16

	name: Render and publish

	on:
	workflow_dispatch:
	push:
	branches:
	- master

	# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
	permissions:
	contents: read
	pages: write
	id-token: write

	jobs:
	# Single deploy job since we're just deploying
	publish-site:
	runs-on: ubuntu-latest
	container:
	image: geertvangeest/single-cell-rstudio:latest
	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Build site
	run: \|
	quarto render

	- name: Setup Pages
	uses: actions/configure-pages@v4

	- name: Upload artifact
	uses: actions/upload-pages-artifact@v3
	with:
	path: '_site/'

	- name: Deploy
	uses: peaceiris/actions-gh-pages@v3
	# If you're changing the branch from main,
	# also change the `main` in `refs/heads/main`
	# below accordingly.
	if: github.ref == 'refs/heads/master'
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_branch: gh-pages
	publish_dir: ./_site

	# jobs:
	# docker:
	# runs-on: ubuntu-latest
	# container: geertvangeest/single-cell-rstudio:latest
	# permissions:
	# contents: write
	# steps:
	# - uses: actions/checkout@v4
	# - name: Publish to GitHub Pages (and render)
	# run: \|
	# quarto publish gh-pages . --no-browser
	# env:
	# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # this secret is always available for github actions

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