Install Packages

  pip3 install flair
  pip3 install seqeval

Datasets

Please Download Datset from Link and followed the method describe in that link to get the CONLL format. and save the data in the Data directory

Run the following code to train the model

    !python3 train.py --dataset_path Data/ \
--data_train train.txt\
--data_test test.txt\
--data_dev dev.txt\
--output_dir model \
--model_name_or_path michiyasunaga/BioLinkBERT-large \
--layers -1\
--subtoken_pooling first_last\
--hidden_size 256\
--learning_rate 5e-5\
--num_epochs 10 \
--use_crf False

Inference

Run the following scrpit to test the best model

  python3 evaluate.py