Skip to content

add check for chr string, remove acrocentric chromosomes from arm con…

Codecov / codecov/patch succeeded Dec 6, 2023 in 1s

8.62% of diff hit (target 39.16%)

View this Pull Request on Codecov

8.62% of diff hit (target 39.16%)

Annotations

Check warning on line 238 in R/callASCN.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/callASCN.R#L236-L238 

Added lines #L236 - L238 were not covered by tests

Check warning on line 468 in R/callASCN.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/callASCN.R#L466-L468 

Added lines #L466 - L468 were not covered by tests

Check warning on line 720 in R/callHSCN.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/callHSCN.R#L718-L720 

Added lines #L718 - L720 were not covered by tests

Check warning on line 667 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L666-L667 

Added lines #L666 - L667 were not covered by tests

Check warning on line 679 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L678-L679 

Added lines #L678 - L679 were not covered by tests

Check warning on line 685 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L685 

Added line #L685 was not covered by tests

Check warning on line 707 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L707 

Added line #L707 was not covered by tests

Check warning on line 711 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L710-L711 

Added lines #L710 - L711 were not covered by tests

Check warning on line 721 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L721 

Added line #L721 was not covered by tests

Check warning on line 725 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L724-L725 

Added lines #L724 - L725 were not covered by tests

Check warning on line 731 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L731 

Added line #L731 was not covered by tests

Check warning on line 751 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L750-L751 

Added lines #L750 - L751 were not covered by tests

Check warning on line 763 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L762-L763 

Added lines #L762 - L763 were not covered by tests

Check warning on line 769 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L769 

Added line #L769 was not covered by tests

Check warning on line 791 in R/heatmap_plot.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/heatmap_plot.R#L791 

Added line #L791 was not covered by tests

Check warning on line 908 in R/plotting.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/plotting.R#L907-L908 

Added lines #L907 - L908 were not covered by tests

Check warning on line 910 in R/plotting.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/plotting.R#L910 

Added line #L910 was not covered by tests

Check warning on line 964 in R/plotting.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/plotting.R#L964 

Added line #L964 was not covered by tests

Check warning on line 994 in R/plotting.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/plotting.R#L994 

Added line #L994 was not covered by tests

Check warning on line 1055 in R/plotting.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/plotting.R#L1055 

Added line #L1055 was not covered by tests

Check warning on line 1139 in R/plotting.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/plotting.R#L1132-L1139 

Added lines #L1132 - L1139 were not covered by tests

Check warning on line 1151 in R/plotting.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/plotting.R#L1142-L1151 

Added lines #L1142 - L1151 were not covered by tests

Check warning on line 1162 in R/plotting.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/plotting.R#L1153-L1162 

Added lines #L1153 - L1162 were not covered by tests

Check warning on line 1278 in R/plotting.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/plotting.R#L1277-L1278 

Added lines #L1277 - L1278 were not covered by tests

Check warning on line 1331 in R/plotting.R

See this annotation in the file changed.

@codecov codecov / codecov/patch

R/plotting.R#L1331 

Added line #L1331 was not covered by tests
View more details on Codecov