v0.11.3

fix negative state issue

v0.11.2

• fix negative state_AS issue. This was caused during the fill missing step which assigns states with NA BAF values based on neighbouring bins. When there was a state transition between bins sometimes A+B>state.

v0.11.1

• Default is not to use PCA in umap_clustering

v0.11.0

• updates to plotting
• male/female option
• filter some cell for second pass phasing but do not remove
• do not remove cells by default if they have low coverage
• keep cells with large hom-dels

v0.10.0

chr check (#53)

* add check for chr string, remove acrocentric chromosomes from arm consensus, modify heatmap plot

* Increment version number to 0.10.0

* bugfix due to seurat v5

v0.9.1

Update Dockerfile (#48)

* Update Dockerfile

* Update DESCRIPTION

* Update NEWS.md

v0.9.0

Fixphasing (#47)

* feature: use all cells for phasing when cluster for phasing has a diploid region

* feature: enable the diploid phasing to only happen in specific chromosomes

* Increment version number to 0.9.0

v0.8.0

Mask bins (#46)

* Updates to plots to work with 10kb bins

* update README and vignette fixes #44

* feature: mask bins during inference

* Increment version number to 0.8.0

* add docker push for release

v0.7.7

• Change from Maj/Min to A/B
• Tweaks to plotting
• Heatmap adjustments

v0.7.6

fix bug in plot_clusters_used_for_phasing