Merge remote-tracking branch 'origin/master'

simba/data_processors/cuda/image.py

@@ -2,9 +2,10 @@
 __email__ = "[email protected]"
 
 
+import math
 import os
 from typing import Optional, Union
-import math
+
 try:
     from typing import Literal
 except:
@@ -20,6 +21,7 @@
 import numpy as np
 from numba import cuda
 
+from simba.mixins.image_mixin import ImageMixin
 from simba.utils.checks import (check_file_exist_and_readable, check_float,
                                 check_if_dir_exists,
                                 check_if_string_value_is_valid_video_timestamp,
@@ -30,9 +32,10 @@
 from simba.utils.data import find_frame_numbers_from_time_stamp
 from simba.utils.enums import Formats
 from simba.utils.errors import FFMPEGCodecGPUError, InvalidInputError
-from simba.utils.printing import stdout_success, SimbaTimer
-from simba.utils.read_write import (check_if_hhmmss_timestamp_is_valid_part_of_video, get_fn_ext, get_video_meta_data, read_img_batch_from_video_gpu)
-from simba.mixins.image_mixin import ImageMixin
+from simba.utils.printing import SimbaTimer, stdout_success
+from simba.utils.read_write import (
+    check_if_hhmmss_timestamp_is_valid_part_of_video, get_fn_ext,
+    get_video_meta_data, read_img_batch_from_video_gpu)
 
 PHOTOMETRIC = 'photometric'
 DIGITAL = 'digital'

simba/roi_tools/ROI_define.py

@@ -7,12 +7,14 @@
 import pandas as pd
 
 from simba.mixins.config_reader import ConfigReader
+from simba.mixins.plotting_mixin import PlottingMixin
 from simba.mixins.pop_up_mixin import PopUpMixin
 from simba.roi_tools.ROI_image import ROI_image_class
 from simba.roi_tools.ROI_move_shape import move_edge, update_all_tags
 from simba.roi_tools.ROI_multiply import create_emty_df
-from simba.roi_tools.ROI_size_calculations import (circle_size_calc, polygon_size_calc, rectangle_size_calc)
-from simba.mixins.plotting_mixin import PlottingMixin
+from simba.roi_tools.ROI_size_calculations import (circle_size_calc,
+                                                   polygon_size_calc,
+                                                   rectangle_size_calc)
 from simba.ui.tkinter_functions import SimbaButton, hxtScrollbar
 from simba.utils.checks import check_file_exist_and_readable
 from simba.utils.enums import Formats, TagNames

simba/roi_tools/ROI_image.py

@@ -7,13 +7,13 @@
 import numpy as np
 import pandas as pd
 
+from simba.mixins.plotting_mixin import PlottingMixin
 from simba.roi_tools.ROI_move_shape import move_edge, move_edge_align
 from simba.roi_tools.ROI_zoom import zoom_in
 from simba.utils.data import add_missing_ROI_cols
 from simba.utils.enums import ConfigKey, Keys, Paths
 from simba.utils.errors import InvalidInputError
 from simba.utils.read_write import get_fn_ext, read_config_file
-from simba.mixins.plotting_mixin import PlottingMixin
 
 
 class ROI_image_class:

simba/roi_tools/ROI_size_calculations.py

@@ -1,7 +1,8 @@
 import math
+
 import numpy as np
-from shapely.geometry import Polygon
 from scipy.spatial import ConvexHull
+from shapely.geometry import Polygon
 
 
 def rectangle_size_calc(rectangle_dict: dict, px_mm: float) -> dict:

simba/utils/read_write.py

@@ -39,8 +39,8 @@
                                 check_if_string_value_is_valid_video_timestamp,
                                 check_instance, check_int,
                                 check_nvidea_gpu_available, check_str,
-                                check_valid_dataframe, check_valid_lst,
-                                check_valid_array, check_valid_boolean)
+                                check_valid_array, check_valid_boolean,
+                                check_valid_dataframe, check_valid_lst)
 from simba.utils.enums import ConfigKey, Dtypes, Formats, Keys, Options
 from simba.utils.errors import (DataHeaderError, DuplicationError,
                                 FFMPEGCodecGPUError, FileExistError,