Skip to content
View seabbs's full-sized avatar
🏠
Working from home
🏠
Working from home
250 followers · 384 following

Sponsoring

@Bisaloo
@paul-buerkner
@stan-dev
@yihui
@SciML
@JuliaLang
@fonsp

Achievements

Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: Galaxy BrainAchievement: YOLOAchievement: QuickdrawAchievement: Public SponsorAchievement: Arctic Code Vault ContributorAchievement: Starstruck

Achievements

Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: Galaxy BrainAchievement: YOLOAchievement: QuickdrawAchievement: Public SponsorAchievement: Arctic Code Vault ContributorAchievement: Starstruck

Block or report seabbs

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
seabbs/README.md

Hi there 👋

I'm an infectious disease researcher interested in real-time analysis, forecasting, semi-mechanistic modelling, and open-source tool development.
NOW
BIO
  • 🏢 2024-: Assistant professor in real-time modelling of infectious disease w/ Sebastian Funk at the London School of Hygiene and Tropical Medicine
  • 🏢 2023-: Contractor supporting the CDC Centre for Forecast and Outbreak Analytics
  • 🏢 2020-2023: Postdoc in real-time modelling of infectious disease w/ Sebastian Funk at the London School of Hygiene and Tropical Medicine
  • 🏢 2017-2019: Data Scientist at Funding Circle
  • 📜 2016-2019: PhD at the University of Bristol on modelling the use of the BCG vaccine in the UK
  • ⚙️ I use daily: R, julia, stan
  • 🏗️ I like to perform analysis using novel models on interesting data and generalise those approaches into software 📦s
  • 🌍 I'm mostly active within the epinowcast community
  • 🌱 Learning all about Julia and Turing.jl - currently wondering why in the world you would use callables.
  • 📘 Reading: Probability and random processes
  • 💬 Ping me about statistical modelling of infectious diseases, real-time analysis of infectious diseases, estimating transmission dynamics in real-time, and team science opportunities
  • 📫 Reach me: [email protected] prob

Pinned Loading

  1. thesis thesis Public

    PhD thesis submitted to the University of Bristol. Title: Modelling BCG vaccination in the UK: What is the impact of changing policy?

    C++ 11 2

  2. epiforecasts/EpiNow2 epiforecasts/EpiNow2 Public

    Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

    R 116 33

  3. epiforecasts/covidregionaldata epiforecasts/covidregionaldata Public

    An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisa…

    R 37 16

  4. epiforecasts/forecast.vocs epiforecasts/forecast.vocs Public

    Contains models and tools to produce short-term forecasts for both case and sequence notifications assuming circulation of either one or two variants. Tools are also provided to allow the evaluatio…

    R 8 3

  5. epinowcast/epinowcast epinowcast/epinowcast Public

    Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.

    R 58 21

  6. epiforecasts/scoringutils epiforecasts/scoringutils Public

    Utilities for Scoring and Assessing Predictions

    R 49 21