Crop around transformed segmentation #89
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- update csa_rescale_stat.py
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@PaulBautin is it ready for review? |
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Yes, it was tested on a 2 subjects that caused issues in precedent runs. |
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@jcohenadad, could you have a look when you find the time? |
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@PaulBautin i'm looking into that now
can you pls specify the 2 subjects you are talking about? i'm trying to reproduce EDIT 2020-10-30 16:59:15: Nevermind, I found the problematic subject and confirm that your new implementation solves that problem 👍 |
jcohenadad
approved these changes
Oct 30, 2020
This was referenced Nov 4, 2020
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This PR aims to implement: #88 (comment). Up to know cropping was performed around a dilated initial segmentation. The new method transforms initial segmentation before cropping image, this ensures spinal cord does not exceed image boundaries.
DONE:
FIX #88