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remove TODO
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Co-authored-by: Jan Valosek <[email protected]>
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sandrinebedard and valosekj authored Mar 26, 2024
1 parent 4641fc7 commit 9f527fd
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1 change: 0 additions & 1 deletion processing_spine_generic/process_data.sh
Original file line number Diff line number Diff line change
Expand Up @@ -526,7 +526,6 @@ for file_path in "${inc_contrasts[@]}";do
rsync -avzh "${PATH_DATA}/derivatives/labels_softseg/${SUBJECT}/${filesoftseg}.json" $PATH_DATA_PROCESSED_CLEAN/derivatives/labels_softseg_bin/${SUBJECT}/${fileseglabel_bin}.json

# Move disc labels into cleaned derivatives
# TODO: ADD IF STATEMENT FOR T1 and T2w label-discs_dlabel instead
if [[ $contrast_seg == *"T2w"* || $contrast_seg == *"T1w"* ]];then
rsync -avzh $PATH_DATA_PROCESSED/${SUBJECT}/${file_path}_label-SC_seg_labeled_discs.nii.gz $PATH_DATA_PROCESSED_CLEAN/derivatives/labels/${SUBJECT}/${file_path}_label-discs_dlabel.nii.gz
else
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