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  1. dicom-mr-classifier dicom-mr-classifier Public archive

    Extract metadata from raw DICOM data from Siemens, Philips, or GE.

    Python 5 6

  2. dcm2niix dcm2niix Public archive

    DICOM/PAR-REC conversion to nifti using Rorden's dcm2niix

    Shell 4 4

  3. dti-error dti-error Public

    Calculate the RMSE between a tensor fit from dtiInit and the diffusion weighted imaging data

    MATLAB 2

  4. retinotopy-templates retinotopy-templates Public

    Applies the retinotopy templates from Benson et al. (2014) PLOS Comput Biol to a FreeSurfer subject output.

    Shell 2

  5. fsl-fast fsl-fast Public

    FMRIB's Automated Segmentation Tool

    Shell 2 2

  6. afq-pipeline afq-pipeline Public

    Flywheel Gear that runs the AFQ processing pipeline

    MATLAB 2 9

Repositories

Showing 10 of 32 repositories
  • nifti-montage Public

    Generate montage from NIfTI

    scitran-apps/nifti-montage’s past year of commit activity
    Python 0 1 0 0 Updated Jun 29, 2024
  • mrtrix3preproc Public

    mrtrix3preproc runs the mrTrix3 preprocessing pipeline in the diffussion data. It uses FSLs topup when the optional inverted phase encoding files are found, otherwise uses the eddy tool. It performs some other denoising steps, and it can normalize or align to acpc the data

    scitran-apps/mrtrix3preproc’s past year of commit activity
    Shell 0 7 0 0 Updated Jun 29, 2024
  • fsl-fast Public

    FMRIB's Automated Segmentation Tool

    scitran-apps/fsl-fast’s past year of commit activity
    Shell 2 2 0 0 Updated Jun 29, 2024
  • fsl-bet Public

    FSL's Brain Extraction Tool (BET)

    scitran-apps/fsl-bet’s past year of commit activity
    Shell 1 2 0 0 Updated Jun 29, 2024
  • gannet Public

    Gannet analysis of edited MRS data

    scitran-apps/gannet’s past year of commit activity
    Shell 0 3 2 2 Updated Mar 14, 2024
  • dtiinit Public

    Vistasoft (mrDiffusion) preprocessing pipeline for diffusion MR data

    scitran-apps/dtiinit’s past year of commit activity
    Python 0 2 4 1 Updated Mar 14, 2024
  • afni-brain-warp Public

    AFNI-based brain warping based on D99 Macaque Atlas warp scripts

    scitran-apps/afni-brain-warp’s past year of commit activity
    Shell 0 0 3 1 Updated Dec 16, 2022
  • afq-pipeline-sdk Public

    AFQ Pipeline Gear using Flywheel SDK

    scitran-apps/afq-pipeline-sdk’s past year of commit activity
    Python 0 0 0 0 Updated Dec 16, 2022
  • qa-dtiprep Public

    dtiPrep quality assurance algorithm

    scitran-apps/qa-dtiprep’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Dec 16, 2022
  • dti-error Public

    Calculate the RMSE between a tensor fit from dtiInit and the diffusion weighted imaging data

    scitran-apps/dti-error’s past year of commit activity
    MATLAB 2 Apache-2.0 0 3 0 Updated Nov 23, 2021
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