feat: Add Cramer-rao uncertainties + covariance using autodiff to non-minuit fits by default #12009
Workflow file for this run
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| name: CI/CD | |
| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - main | |
| - release/v* | |
| # Run daily at 0:01 UTC | |
| schedule: | |
| - cron: '1 0 * * *' | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| # On push events run the CI only on main by default, but run on any branch if the commit message contains '[ci all]' | |
| if: >- | |
| github.event_name != 'push' | |
| || (github.event_name == 'push' && github.ref == 'refs/heads/main') | |
| || (github.event_name == 'push' && github.ref != 'refs/heads/main' && contains(github.event.head_commit.message, '[ci all]')) | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| include: | |
| - os: macos-latest | |
| python-version: '3.11' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade .[test] | |
| - name: List installed Python packages | |
| run: python -m pip list | |
| - name: Test with pytest and coverage | |
| run: | | |
| coverage run --module pytest --ignore tests/contrib --ignore tests/benchmarks --ignore tests/test_notebooks.py | |
| - name: Launch a tmate session if tests fail | |
| if: failure() && github.event_name == 'workflow_dispatch' | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: Coverage report for core project | |
| run: | | |
| coverage report | |
| coverage xml | |
| # Report coverage for oldest and newest Python tested to deal with version differences | |
| - name: Report core project coverage with Codecov | |
| if: >- | |
| github.event_name != 'schedule' && | |
| matrix.os == 'ubuntu-latest' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./coverage.xml | |
| flags: unittests-${{ matrix.python-version }} | |
| - name: Test Contrib module with pytest | |
| run: | | |
| coverage run --append --module pytest tests/contrib --mpl --mpl-baseline-path tests/contrib/baseline | |
| - name: Coverage report with contrib | |
| run: | | |
| coverage report | |
| coverage xml | |
| - name: Report contrib coverage with Codecov | |
| if: github.event_name != 'schedule' && matrix.python-version == '3.11' && matrix.os == 'ubuntu-latest' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./coverage.xml | |
| flags: contrib | |
| - name: Test docstring examples with doctest | |
| if: matrix.python-version == '3.11' | |
| run: coverage run --data-file=.coverage-doctest --module pytest src/ README.rst | |
| - name: Coverage report for doctest only | |
| if: matrix.python-version == '3.11' | |
| run: | | |
| coverage report --data-file=.coverage-doctest | |
| coverage xml --data-file=.coverage-doctest -o doctest-coverage.xml | |
| - name: Report doctest coverage with Codecov | |
| if: github.event_name != 'schedule' && matrix.python-version == '3.11' && matrix.os == 'ubuntu-latest' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: doctest-coverage.xml | |
| flags: doctest | |
| - name: Run benchmarks | |
| if: github.event_name == 'schedule' && matrix.python-version == '3.11' | |
| run: | | |
| pytest --benchmark-sort=mean tests/benchmarks/test_benchmark.py |