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NEMAR-pipeline

Code for NEMAR pipeline to generate visualization and data quality report. Refactored https://github.com/sccn/app-test-NEMAR

Using your own function

  • Make sure you have an Expanse
  • Clone the repository

There are 2 types of pipelines

  • Pipelines that process single EEG datasets
  • Pipelines that process an entire BIDS repo

process_all_custom_pipelines

  • Take a BIDS dataset
  • Take a function name to process the data

Allow to use the processed directory instead of the raw data folder

3 modes

  • Process single EEG dataset
  • Process all EEG datasets of a subject
  • Process a STUDY
  • Process the BIDS folder

The function should write a JSON or SVG file into the same folder as the EEG file or the same folder as the derivative BIDS repo

  • At the same time

options - options to the function

Parameters

Inclusion to the NEMAR website

  • Send the name of the file to Dung
  • If a plot, send the title
    • associated titled
    • file name
  • If a JSON file, for each entry send. No array allowed.
    • title
    • field
    • description