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KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (20 sequences, 6 countries) #2026

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Over-There-Is opened this issue Sep 13, 2024 · 15 comments
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@Over-There-Is
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Over-There-Is commented Sep 13, 2024

KP.3.1.1> C1441T> A26760C(M:I80L), G28423C(Orf9b:R47P)
Query: A26760C, G28423C

Earliest sequence: 07-22 New York City, New York, USA EPI_ISL_19310813
Latest sequence: 09-06 Utah, USA EPI_ISL_19416909
Regions detected: US 5, Italy 4, Denmark 3, Canada 2

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_5e932_acec00.json?c=country&label=id:node_7033124
image
Sequences:
EPI_ISL_19310813, EPI_ISL_19340122, EPI_ISL_19378173,
EPI_ISL_19378191, EPI_ISL_19378985, EPI_ISL_19410881,
EPI_ISL_19410913, EPI_ISL_19410917, EPI_ISL_19411048,
EPI_ISL_19412118, EPI_ISL_19416249, EPI_ISL_19416902,
EPI_ISL_19416909, EPI_ISL_19420984

@FedeGueli
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M:I80L despite being jsut in 200 seqs was featured in AY.122 sublineage in Sweden that reached 100Seqs and showed an advantage over Delta and Ay.122 in Sweden. it had also S:S221L but i don't think the advantage came from that

@FedeGueli FedeGueli changed the title KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (10 sequences, 4 countries) KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (11 sequences, 4 countries) Sep 17, 2024
@FedeGueli
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+1 NJ

@Over-There-Is Over-There-Is changed the title KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (11 sequences, 4 countries) KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (12 sequences, 4 countries) Sep 18, 2024
@Over-There-Is Over-There-Is changed the title KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (12 sequences, 4 countries) KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (14 sequences, 4 countries) Sep 18, 2024
@Over-There-Is
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Over-There-Is commented Sep 18, 2024

It's too hard to handle so many proposals.

@FedeGueli
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It's too hard to handle so many proposals.

it happens all the time don't worry. i will close many in the next days. better cklosing and reopening if something starts growing than leaving an issue lost among hundreds

@Over-There-Is Over-There-Is changed the title KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (14 sequences, 4 countries) KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (17 sequences, 6 countries) Sep 24, 2024
@Over-There-Is
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Ireland, Sweden

@FedeGueli FedeGueli added the To be proposed Green light for proposal label Sep 24, 2024
@FedeGueli
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Please propose it it is showing sings of advantage all to be confirmed. @ryhisner pleae take a look two interesting non spike muts (not urgent)

@FedeGueli
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FedeGueli commented Sep 25, 2024

@Over-There-Is did u change the query? i had a different one registered (T23464C, A26760C, G28423C)

@Over-There-Is
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I have removed T23464C from the query to include sequences without it.

@Over-There-Is
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And I have a deadline in 2 days, so I have no enough time to transfer this proposal right now.

@FedeGueli
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And I have a deadline in 2 days, so I have no enough time to transfer this proposal right now.

no hurry

@Over-There-Is Over-There-Is changed the title KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (17 sequences, 6 countries) KP.3.1.1 subbranch with M:I80L, Orf9b:R47P (20 sequences, 6 countries) Sep 29, 2024
@Over-There-Is
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It's still 20 sequences now. Should I propose it?

@FedeGueli
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It's still 20 sequences now. Should I propose it?
yes plese

@Over-There-Is
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@Over-There-Is Should I transfer this issue to the man page right now?

Could anyone ban this account?

@Over-There-Is
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@FedeGueli
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