add explorer tutorial

quadbio · May 21, 2024 · 9dfc43b · 9dfc43b
1 parent 3b6fb71
commit 9dfc43b
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Showing 14 changed files with 11,129 additions and 29 deletions.
diff --git a/.gitignore b/.gitignore
@@ -33,7 +33,7 @@ run.log
 .ipynb_checkpoints
 exploration/*
 *.ipynb
-!docs/tutorials/**.ipynb
+!docs/tutorials/**/**.ipynb
 !notebooks/*.ipynb
 
 # pyenv

diff --git a/docs/tutorials/explorer.ipynb b/docs/tutorials/explorer.ipynb
diff --git a/docs/tutorials/xenium_explorer/Selection_1_cells_stats.csv b/docs/tutorials/xenium_explorer/Selection_1_cells_stats.csv
@@ -0,0 +1,35 @@
+#Selection name: Selection 1
+#Area (µm^2): 17593.82
+Cell ID,Cluster,Transcripts,Area (µm^2)
+aaaaaban-1,1,8,79.91
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+aaaaaaof-1,2,7,79.91
diff --git a/docs/tutorials/xenium_explorer/Selection_1_coordinates.csv b/docs/tutorials/xenium_explorer/Selection_1_coordinates.csv
@@ -0,0 +1,74 @@
+#Selection name: Selection 2
+#Area (µm^2): 17440.76
+X,Y
+202.70,165.52
+214.00,165.85
+217.40,170.01
+217.79,177.95
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