wyy_dot_n_bin

Purpose

This is a collection of useful BASH scripts and aliases to automatize the workflow in bioinformatics related research.

Dependencies

The scripts wrap the following software packages.

# Genotype Harmonizer
# PLINK
# SHAPEIT
# IMPUTE2

Usage

Get or Update the repo

cd your_path
git clone https://github.com/qpding/wyy_dot_n_bin.git

Display help

command_or_script_name -h

Set up script permissions

Refer to the following command to make the scripts executable. In normal cases this has to be done only once after the repository is cloned.

cd path_to_the_scripts
chmod +x ./script_name.sh

Reference

Refer to this blog for a general workflow of GWAS prephasing and imputation.