Reorient brain, move dropdown

qMRLab · Jan 15, 2025 · d95342a · d95342a
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diff --git a/4 B1 Mapping/02-Actual Flip Angle Imaging/02-SignalModeling.md b/4 B1 Mapping/02-Actual Flip Angle Imaging/02-SignalModeling.md
@@ -41,7 +41,7 @@ M_{z2}=M_{0}\frac{1-e^{\frac{-\text{TR}_{1}}{_{T_{1}}}}+\left( 1- e^{\frac{-\tex
 \end{equation}
 ```
 
-Mz{sub}`1,2` is the longitudinal magnetization of both pulses, M0 is the magnetization at thermal equilibrium, TR{sub}`1` is the delay time after the first pulse, TR{sub}`2` is the delay time after the second identical pulse ([](#afiFig1)), and {math}`\theta` is the excitation flip angle. The steady-state longitudinal magnetization Mz curves for different _T_{sub}`1` values for a range of {math}`\theta_{n}` and TR values are shown in [](#afiPlot1).
+Mz{sub}`1,2` is the longitudinal magnetization of both pulses, M0 is the magnetization at thermal equilibrium, TR{sub}`1` is the delay time after the first pulse, TR{sub}`2` is the delay time after the second identical pulse ([](#afiPlot1)), and {math}`\theta` is the excitation flip angle. The steady-state longitudinal magnetization Mz curves for different _T_{sub}`1` values for a range of {math}`\theta_{n}` and TR values are shown in [](#afiPlot1).
 
 ```{figure} #afiFig1jn
 :label: afiPlot1

diff --git a/5 B0 Mapping/1 B0 Inhomogeneities/Notebooks/Figure-5-1-3.ipynb b/5 B0 Mapping/1 B0 Inhomogeneities/Notebooks/Figure-5-1-3.ipynb
diff --git a/binder/data_requirement.json b/binder/data_requirement.json
@@ -3,47 +3,47 @@
     "dst": "../data",
     "projectName": "qmrlab-t1-book"
     },
-    "02-T1-01-IR":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/02-T1-01-IR.zip",
+    "02-T1-01-IR":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/02-T1-01-IR.zip",
     "dst": "../data",
     "projectName": "02-T1-IR"
     },
-    "02-T1-02-VFA":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/02-T1-02-VFA.zip",
+    "02-T1-02-VFA":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/02-T1-02-VFA.zip",
     "dst": "../data",
     "projectName": "02-T1-02-VFA"
     },
-    "02-T1-03-MP2RAGE":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/02-T1-03-MP2RAGE.zip",
+    "02-T1-03-MP2RAGE":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/02-T1-03-MP2RAGE.zip",
     "dst": "../data",
     "projectName": "02-T1-03-MP2RAGE"
     },
-    "03-T2":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/03-T2.zip",
+    "03-T2":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/03-T2.zip",
     "dst": "../data",
     "projectName": "03-T2"
     },
-    "04-B1-01-DoubleAngle":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/04-B1-01-DoubleAngle.zip",
+    "04-B1-01-DoubleAngle":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/04-B1-01-DoubleAngle.zip",
     "dst": "../data",
     "projectName": "04-B1-01-DoubleAngle"
     },
-    "04-B1-02-AFI":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/04-B1-02-AFI.zip",
+    "04-B1-02-AFI":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/04-B1-02-AFI.zip",
     "dst": "../data",
     "projectName": "04-B1-02-AFI"
     },
-    "04-B1-03-Filtering":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/04-B1-03-Filtering.zip",
+    "04-B1-03-Filtering":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/04-B1-03-Filtering.zip",
     "dst": "../data",
     "projectName": "04-B1-03-Filtering"
     },
-    "05-B0":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/05-B0.zip",
+    "05-B0":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/05-B0.zip",
     "dst": "../data",
     "projectName": "05-B0"
     },
-    "06-MT-01-qMT":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/06-MT-01-qMT.zip",
+    "06-MT-01-qMT":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/06-MT-01-qMT.zip",
     "dst": "../data",
     "projectName": "06-MT-01-qMT"
     },
-    "06-MT-02-MTR":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/06-MT-02-MTR.zip",
+    "06-MT-02-MTR":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/06-MT-02-MTR.zip",
     "dst": "../data",
     "projectName": "06-MT-02-MTR"
     },
-    "06-MT-03-MTsat":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.0/06-MT-03-MTsat.zip",
+    "06-MT-03-MTsat":{ "src": "https://github.com/qMRLab/mooc-data/releases/download/v1.1/06-MT-03-MTsat.zip",
     "dst": "../data",
     "projectName": "06-MT-03-MTsat"
     }

diff --git a/binder/requirements.txt b/binder/requirements.txt
@@ -7,4 +7,6 @@ networkx
 repo2data==2.9.1
 chart_studio
 matplotlib
-nbformat>=4.2.0
+nbformat>=4.2.0
+pandas
+nibabel