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Merges develop into release (1.17.0 tag prep) #1867

Merged
merged 549 commits into from
Nov 4, 2024
Merged

Merges develop into release (1.17.0 tag prep) #1867

merged 549 commits into from
Nov 4, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Jul 27, 2024

  1. fix bug

    debora-pe committed Jul 27, 2024
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  2. set param to True

    debora-pe committed Jul 27, 2024
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  3. small things

    debora-pe committed Jul 27, 2024
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  4. fixed missing argument

    rcooke-ast committed Jul 27, 2024
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Commits on Jul 28, 2024

  1. deal with mismatched orders

    debora-pe committed Jul 28, 2024
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  2. add to release

    debora-pe committed Jul 28, 2024
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  3. fix bug

    debora-pe committed Jul 28, 2024
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Commits on Jul 29, 2024

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  2. Merge pull request #1770 from pypeit/kcwi_cube_updates

    Nonlinearity correction + datacube spec1d extractions + datacube fluxing improvements
    rcooke-ast authored Jul 29, 2024
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  4. Merge branch 'uves_popler_tmp' into uves_popler

    # Conflicts:
    #	pypeit/core/flexure.py
    rcooke-ast committed Jul 29, 2024
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  7. fix bug

    debora-pe committed Jul 29, 2024
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Commits on Jul 30, 2024

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  2. error and doc

    debora-pe committed Jul 30, 2024
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  3. changed default fwhm_fromlines behavior

    Frederick Davies committed Jul 30, 2024
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  4. gain and read noise for uvb/vis from headers

    Frederick Davies committed Jul 30, 2024
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  5. correctly frametype lampoffflats

    Frederick Davies committed Jul 30, 2024
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  6. Merge branch 'xsh_nir_objtrace' of https://github.com/pypeit/PypeIt i…

    …nto xsh_nir_objtrace
    Frederick Davies committed Jul 30, 2024
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  7. doc update

    Frederick Davies committed Jul 30, 2024
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  8. Merge branch 'develop' into xsh_nir_objtrace

    Frederick Davies committed Jul 30, 2024
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Commits on Jul 31, 2024

  1. add AAT/UHRF

    rcooke-ast committed Jul 31, 2024
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  2. add AAT/UHRF wavelength solution (CN)

    rcooke-ast committed Jul 31, 2024
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  3. allow to set max overlap

    kbwestfall committed Jul 31, 2024
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  4. doc update

    kbwestfall committed Jul 31, 2024
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  5. changes

    kbwestfall committed Jul 31, 2024
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  6. doc updates

    rcooke-ast committed Jul 31, 2024
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  7. fix a bug

    debora-pe committed Jul 31, 2024
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Commits on Aug 1, 2024

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  2. pre-merge fixes

    debora-pe committed Aug 1, 2024
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Commits on Aug 2, 2024

  1. interrupt

    kbwestfall committed Aug 2, 2024
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  2. before testing

    kbwestfall committed Aug 2, 2024
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Commits on Aug 7, 2024

  1. most of the docs

    debora-pe committed Aug 7, 2024
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  2. all minor-ish comments

    debora-pe committed Aug 7, 2024
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Commits on Aug 9, 2024

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Commits on Aug 10, 2024

  1. flip check

    rcooke-ast committed Aug 10, 2024
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Commits on Aug 12, 2024

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  2. update release logs

    rcooke-ast committed Aug 12, 2024
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  3. Merge pull request #1837 from pypeit/hotfix_align

    Hotfix display
    kbwestfall authored Aug 12, 2024
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  5. Merge pull request #1828 from Adolfo1519/develop

    fixed PHOENIX A0V atmosphere read error & identify save error
    profxj authored Aug 12, 2024
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  6. switch instance test

    kbwestfall committed Aug 12, 2024
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  8. fix file extensions

    kbwestfall committed Aug 12, 2024
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Commits on Aug 13, 2024

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  2. test + doc fixes

    kbwestfall committed Aug 13, 2024
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  5. doc update

    kbwestfall committed Aug 13, 2024
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  6. test fix

    kbwestfall committed Aug 13, 2024
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  9. PR comments

    kbwestfall committed Aug 13, 2024
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  11. add kind=stable to argsort

    (cherry picked from commit e6abfcd)
    debora-pe committed Aug 13, 2024
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  12. detailed changes

    kbwestfall committed Aug 13, 2024
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  13. added to release

    debora-pe committed Aug 13, 2024
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Commits on Aug 14, 2024

  1. Merge pull request #1840 from pypeit/argsort_fix

    Numpy Argsort fix
    debora-pe authored Aug 14, 2024
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Commits on Aug 15, 2024

  1. overlap fix

    kbwestfall committed Aug 15, 2024
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  4. fixes to docstrings

    debora-pe committed Aug 15, 2024
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Commits on Aug 16, 2024

  1. to be continued...

    debora-pe committed Aug 16, 2024
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  2. update extensions

    rcooke-ast committed Aug 16, 2024
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Commits on Aug 17, 2024

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  2. fix docs

    debora-pe committed Aug 17, 2024
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Commits on Aug 18, 2024

  1. allow fits.gz

    rcooke-ast committed Aug 18, 2024
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Commits on Aug 19, 2024

  1. pr comments on platescale

    Frederick Davies committed Aug 19, 2024
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  2. oops, did not need to remove these Nones

    Frederick Davies committed Aug 19, 2024
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  3. unify blaze computation

    rcooke-ast committed Aug 19, 2024
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  4. added a note

    debora-pe committed Aug 19, 2024
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  5. Merge pull request #1833 from pypeit/random_fixes

    STD STAR FIXES
    debora-pe authored Aug 19, 2024
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Commits on Aug 20, 2024

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  2. Merge branch 'develop' into filesearch

    # Conflicts:
    #	doc/releases/1.16.1dev.rst
    rcooke-ast committed Aug 20, 2024
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  4. update users Aug 2024

    rcooke-ast committed Aug 20, 2024
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  6. bug fix

    kbwestfall committed Aug 20, 2024
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Commits on Aug 21, 2024

  1. Add pseudo-blaze to test IDL files

    rcooke-ast committed Aug 21, 2024
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  2. Merge branch 'develop' into uves_popler

    # Conflicts:
    #	pypeit/coadd1d.py
    #	pypeit/sensfunc.py
    #	pypeit/specobjs.py
    rcooke-ast committed Aug 21, 2024
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Commits on Aug 22, 2024

  1. fix to build_fwhmimg

    debora-pe committed Aug 22, 2024
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Commits on Aug 23, 2024

  1. add spaces

    rcooke-ast committed Aug 23, 2024
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Commits on Aug 24, 2024

  1. script added

    debora-pe committed Aug 24, 2024
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  2. remove commented out

    debora-pe committed Aug 24, 2024
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Commits on Aug 26, 2024

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  3. release update

    kbwestfall committed Aug 26, 2024
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  4. Merge pull request #1839 from pypeit/filesearch

    Refactor file discovery
    kbwestfall authored Aug 26, 2024
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  6. doc update

    kbwestfall committed Aug 26, 2024
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  7. Merge pull request #1832 from pypeit/xsh_nir_objtrace

    Propagate trace_npoly in ech_findobj + minor X-Shooter tweaks
    kbwestfall authored Aug 26, 2024
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  15. revert to old masking

    rcooke-ast committed Aug 26, 2024
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  16. rm old arc line

    rcooke-ast committed Aug 26, 2024
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  18. added doc to release

    debora-pe committed Aug 26, 2024
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  19. small change

    debora-pe committed Aug 26, 2024
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  20. move to a function

    debora-pe committed Aug 26, 2024
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  21. Merge pull request #1844 from pypeit/chk_flexure

    pypeit_chk_flexure
    debora-pe authored Aug 26, 2024
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Commits on Aug 27, 2024

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  2. Merge branch 'develop' into aat_uhrf

    # Conflicts:
    #	doc/releases/1.16.1dev.rst
    rcooke-ast committed Aug 27, 2024
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Commits on Aug 28, 2024

  1. doc update

    kbwestfall committed Aug 28, 2024
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  2. add docs

    kbwestfall committed Aug 28, 2024
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  5. doc update

    kbwestfall committed Aug 28, 2024
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Commits on Aug 29, 2024

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  2. small fixes

    debora-pe committed Aug 29, 2024
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  4. rm commented code

    kbwestfall committed Aug 29, 2024
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  5. Merge pull request #1845 from pypeit/flexure_diag

    Move flexure diagnostic code to class methods
    kbwestfall authored Aug 29, 2024
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Commits on Aug 30, 2024

  1. Merge pull request #1820 from pypeit/slitless_flats

    SLITLESS FLAT
    profxj authored Aug 30, 2024
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  3. doc update

    kbwestfall committed Aug 30, 2024
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  4. Merge branch 'develop' into aat_uhrf

    # Conflicts:
    #	doc/releases/1.16.1dev.rst
    rcooke-ast committed Aug 30, 2024
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  7. Merge pull request #1834 from pypeit/aat_uhrf

    Adding support for the (decommissioned) spectrograph: AAT/UHRF
    kbwestfall authored Aug 30, 2024
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  9. doc update

    kbwestfall committed Aug 30, 2024
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  11. Merge branch 'develop' into bh3_support

    # Conflicts:
    #	doc/releases/1.16.1dev.rst
    rcooke-ast committed Aug 30, 2024
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  12. fix it

    debora-pe committed Aug 30, 2024
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  13. update docs

    debora-pe committed Aug 30, 2024
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Commits on Aug 31, 2024

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Commits on Sep 1, 2024

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  3. fix reshape

    rcooke-ast committed Sep 1, 2024
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  4. rm flatfile

    rcooke-ast committed Sep 1, 2024
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  5. add checks

    rcooke-ast committed Sep 1, 2024
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Commits on Sep 2, 2024

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Commits on Sep 3, 2024

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  4. consolidate read function

    kbwestfall committed Sep 3, 2024
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  5. rm import

    kbwestfall committed Sep 3, 2024
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  6. minor edits

    kbwestfall committed Sep 3, 2024
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  7. require_dim

    kbwestfall committed Sep 3, 2024
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Commits on Sep 4, 2024

  1. Addresses PR comments

    rcooke-ast committed Sep 4, 2024
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  3. Specify remote_host in call to PypeItDataPath

    When caching from GitHub using the script `pypeit_cache_github_data`,
    an error was kicked complaining about "Remote host type None is not
    supported for package data caching."  This commit corrects the issue
    by specifying the `remote_host` in the instantiation of PypeItDataPath.
    
    	modified:   pypeit/scripts/cache_github_data.py
    tbowers7 committed Sep 4, 2024
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  4. Merge pull request #1852 from pypeit/cache_github_fix

    Specify `remote_host` in call to PypeItDataPath
    finagle29 authored Sep 4, 2024
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Commits on Sep 5, 2024

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  2. flatfield model masking

    rcooke-ast committed Sep 5, 2024
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  3. fix argument value

    rcooke-ast committed Sep 5, 2024
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  4. fix argument value

    rcooke-ast committed Sep 5, 2024
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  5. Merge pull request #1851 from pypeit/autosec

    Enable Spectrograph base class to account for image sections that include on-chip binning
    kbwestfall authored Sep 5, 2024
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  8. doc update

    kbwestfall committed Sep 5, 2024
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Commits on Sep 6, 2024

  1. doc update

    kbwestfall committed Sep 6, 2024
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  2. changes

    kbwestfall committed Sep 6, 2024
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  3. test numpy 2.1

    kbwestfall committed Sep 6, 2024
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  4. Merge pull request #1848 from pypeit/fix_spatflex

    HOTFIX to SlitTraceBitMask
    debora-pe authored Sep 6, 2024
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  8. Merge pull request #1854 from pypeit/dep310

    Package dependency updates
    profxj authored Sep 6, 2024
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  11. doc update

    kbwestfall committed Sep 6, 2024
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  13. doc update

    kbwestfall committed Sep 6, 2024
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  15. doc update

    kbwestfall committed Sep 6, 2024
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Commits on Sep 9, 2024

  1. Merge pull request #1830 from pypeit/uves_popler

    UVES Popler support for coadding data
    rcooke-ast authored Sep 9, 2024
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  6. Merge pull request #1849 from pypeit/p200_dbsp_binning_fix

    P200 DBSP misc updates
    kbwestfall authored Sep 9, 2024
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Commits on Sep 10, 2024

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  2. fix book-keeping bug

    Co-authored-by: Debora Pelliccia <[email protected]>
    kbwestfall and debora-pe authored Sep 10, 2024
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Commits on Sep 11, 2024

  1. order_outlier=None

    debora-pe committed Sep 11, 2024
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  2. Merge pull request #1847 from pypeit/bh3_support

    Keck/KCWI BH3 support
    rcooke-ast authored Sep 11, 2024
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Commits on Sep 16, 2024

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Commits on Sep 17, 2024

  1. fix echelle waveimg bug

    debora-pe committed Sep 17, 2024
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  3. comments

    debora-pe committed Sep 17, 2024
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  4. DR comments; doc update

    kbwestfall committed Sep 17, 2024
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Commits on Sep 18, 2024

  1. user_objid

    debora-pe committed Sep 18, 2024
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Commits on Sep 19, 2024

  1. doc update

    kbwestfall committed Sep 19, 2024
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Commits on Sep 20, 2024

  1. small cleanup

    debora-pe committed Sep 20, 2024
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  2. added to realease doc

    debora-pe committed Sep 20, 2024
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  3. Merge pull request #1821 from pypeit/lris_jun24

    Minor improvements to quicklook, coadd2d as well as a bug fix
    debora-pe authored Sep 20, 2024
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Commits on Oct 2, 2024

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Commits on Oct 19, 2024

  1. added measured_fwhm option

    debora-pe committed Oct 19, 2024
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  2. small fix to chk_tilts

    debora-pe committed Oct 19, 2024
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Commits on Oct 20, 2024

  1. remove embed

    debora-pe committed Oct 20, 2024
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  2. small doc changes

    debora-pe committed Oct 20, 2024
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  3. small doc changes

    debora-pe committed Oct 20, 2024
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Commits on Oct 21, 2024

  1. add b480

    profxj committed Oct 21, 2024
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Commits on Oct 23, 2024

  1. fix it

    debora-pe committed Oct 23, 2024
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Commits on Oct 28, 2024

  1. rm codecov?

    kbwestfall committed Oct 28, 2024
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  3. Merge pull request #1864 from pypeit/rmcodecov

    Remove dependence on codecov
    kbwestfall authored Oct 28, 2024
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  4. add order prediction qa

    kbwestfall committed Oct 28, 2024
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Commits on Oct 29, 2024

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  3. order qa plot

    kbwestfall committed Oct 29, 2024
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  5. Merge pull request #1835 from pypeit/order_sync

    Issues with adding missing orders
    kbwestfall authored Oct 29, 2024
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  7. doc

    debora-pe committed Oct 29, 2024
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  8. Merge pull request #1861 from pypeit/tilts_fwhm

    Allow `fwhm_fromlines` for tilts calibration
    debora-pe authored Oct 29, 2024
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  10. Merge pull request #1863 from pypeit/hotfix_slitless

    HOTFIX to slitless pixflat
    debora-pe authored Oct 29, 2024
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  12. Merge pull request #1841 from Adolfo1519/develop

    Adding orderStacks as a default coadd.py output for Echelle spectrographs
    kbwestfall authored Oct 29, 2024
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  14. changes; clean-up

    kbwestfall committed Oct 29, 2024
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Commits on Oct 30, 2024

  1. test fix

    kbwestfall committed Oct 30, 2024
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Commits on Oct 31, 2024

  1. Merge pull request #1865 from pypeit/mosaic_try_old

    Fix bug when reading mosaic data in files from previous pypeit versions.
    kbwestfall authored Oct 31, 2024
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  2. doc update

    kbwestfall committed Oct 31, 2024
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Commits on Nov 1, 2024

  1. bump release notes

    kbwestfall committed Nov 1, 2024
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  3. only zipped files

    kbwestfall committed Nov 1, 2024
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  4. release doc fix

    kbwestfall committed Nov 1, 2024
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Commits on Nov 4, 2024

  1. Merge pull request #1868 from pypeit/gmos_s_b480

    Add b480 as a supported option for Gemini GMOS-S
    kbwestfall authored Nov 4, 2024
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  3. doc update

    kbwestfall committed Nov 4, 2024
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  4. changes

    kbwestfall committed Nov 4, 2024
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