Fix emapper merge

prototaxites · May 6, 2024 · ba2f403 · ba2f403
1 parent 836af53
commit ba2f403
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diff --git a/conf/modules.config b/conf/modules.config
@@ -27,6 +27,10 @@ process {
         ext.prefix = { "${meta.sampleid}" }
     }
 
+    withName: CAT_EMAPPER {
+        ext.prefix = { "${meta.assemblyid}" }
+    }
+
     withName: CAT_FASTA {
         ext.prefix = { "${meta.assemblyid}" }
     }

diff --git a/subworkflows/annotation.nf b/subworkflows/annotation.nf
@@ -63,6 +63,10 @@ workflow ANNOTATION {
 
     // Reassemble chunked eggnog output
     ch_annotations_to_merge = EGGNOG_MAPPER.out.annotations
+        | map { meta, emapper -> 
+            def meta_new = meta.submap("assemblyid")
+            [ meta_new, emapper ]
+        }
         | groupTuple(by: 0)
 
     CAT_EMAPPER(ch_annotations_to_merge, 5, "#")