temp disable coverage

prototaxites · May 2, 2024 · 4eba02e · 4eba02e
1 parent 4939623
commit 4eba02e
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Showing 2 changed files with 9 additions and 10 deletions.
diff --git a/subworkflows/coverage.nf b/subworkflows/coverage.nf
@@ -55,12 +55,11 @@ workflow COVERAGE {
             go_list
         )
 
-        GENES_TO_GOS.out.gosummary
+        ch_gosummaries = GENES_TO_GOS.out.gosummary
             | map { meta, gosummary ->
                 [ gosummary ]
             }
             | collect
-            | set { ch_gosummaries }
 
         SUMMARISE_GOS(
             ch_gosummaries,

diff --git a/workflows/mgannotate.nf b/workflows/mgannotate.nf
@@ -52,14 +52,14 @@ workflow MGANNOTATE {
             ch_versions = ch_versions.mix(ANNOTATION.out.versions)
 
             if(params.enable_coverage && params.go_list) {
-                COVERAGE(
-                    INPUT_CHECK.out.reads,
-                    ANNOTATION.out.contigs,
-                    ANNOTATION.out.annotations,
-                    ANNOTATION.out.gff,
-                    DATABASES.out.go_list
-                )
-                ch_versions = ch_versions.mix(COVERAGE.out.versions)
+                // COVERAGE(
+                //     INPUT_CHECK.out.reads,
+                //     ANNOTATION.out.contigs,
+                //     ANNOTATION.out.annotations,
+                //     ANNOTATION.out.gff,
+                //     DATABASES.out.go_list
+                // )
+                // ch_versions = ch_versions.mix(COVERAGE.out.versions)
             }
         }
     }