Add clustering of genes #18

	name: nf-core CI
	# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
	on:
	pull_request:
	release:
	types: [published]

	env:
	NXF_ANSI_LOG: false

	concurrency:
	group: "{% raw %}${{ github.workflow }}-${{ github.event.pull_request.number \|\| github.ref }}{% endraw %}"
	cancel-in-progress: true

	jobs:
	test:
	name: Run pipeline with test data
	# Only run on push if this is the nf-core dev branch (merged PRs)
	if: "${{ github.event_name != 'push' \|\| (github.event_name == 'push' && github.repository == 'prototaxites/mgannotate') }}"
	runs-on: ubuntu-latest
	strategy:
	matrix:
	profile:
	[
	test,
	]
	steps:
	- name: Check out pipeline code
	uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4

	- name: Install Nextflow
	run: \|
	wget -qO- get.nextflow.io \| bash
	sudo mv nextflow /usr/local/bin/

	- name: Disk space cleanup
	uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1

	- name: Run pipeline with test data
	run: \|
	nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.profile }},docker --outdir ./results

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