add CI #1
Workflow file for this run
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| name: nf-core CI | ||
| # This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors | ||
| on: | ||
| push: | ||
| pull_request: | ||
| release: | ||
| types: [published] | ||
| env: | ||
| NXF_ANSI_LOG: false | ||
| concurrency: | ||
| group: "{% raw %}${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}{% endraw %}" | ||
| cancel-in-progress: true | ||
| jobs: | ||
| test: | ||
| name: Run pipeline with test data | ||
| # Only run on push if this is the nf-core dev branch (merged PRs) | ||
| if: "{% raw %}${{{% endraw %} github.event_name != 'push' || (github.event_name == 'push' && github.repository == '{{ name }}') {% raw %}}}{% endraw %}" | ||
|
Check failure on line 20 in .github/workflows/ci.yml
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| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| profile: | ||
| [ | ||
| test, | ||
| test_assembly, | ||
| ] | ||
| steps: | ||
| - name: Check out pipeline code | ||
| uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4 | ||
| - name: Install Nextflow | ||
| uses: nf-core/setup-nextflow@v1 | ||
| with: | ||
| version: "{% raw %}${{ matrix.NXF_VER }}{% endraw %}" | ||
| - name: Disk space cleanup | ||
| uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1 | ||
| - name: Run pipeline with test data | ||
| run: | | ||
| nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.profile }},docker --outdir ./results | ||
