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@slinderman
slinderman committed Feb 27, 2024
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2 changes: 1 addition & 1 deletion .buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 160d8a7446a664bdd3f903375ee4f253
config: 8c39ab138bc9a7932b909a6435eab682
tags: 645f666f9bcd5a90fca523b33c5a78b7
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112 changes: 68 additions & 44 deletions README.html
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<!DOCTYPE html>


<html lang="en" >
<html lang="en" data-content_root="./" >

<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.19: https://docutils.sourceforge.io/" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<title>Documentation</title>

Expand All @@ -19,31 +18,29 @@
</script>

<!-- Loaded before other Sphinx assets -->
<link href="_static/styles/theme.css?digest=e353d410970836974a52" rel="stylesheet" />
<link href="_static/styles/bootstrap.css?digest=e353d410970836974a52" rel="stylesheet" />
<link href="_static/styles/pydata-sphinx-theme.css?digest=e353d410970836974a52" rel="stylesheet" />
<link href="_static/styles/theme.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />
<link href="_static/styles/bootstrap.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />
<link href="_static/styles/pydata-sphinx-theme.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />


<link href="_static/vendor/fontawesome/6.1.2/css/all.min.css?digest=e353d410970836974a52" rel="stylesheet" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="_static/vendor/fontawesome/6.1.2/webfonts/fa-solid-900.woff2" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="_static/vendor/fontawesome/6.1.2/webfonts/fa-brands-400.woff2" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="_static/vendor/fontawesome/6.1.2/webfonts/fa-regular-400.woff2" />
<link href="_static/vendor/fontawesome/6.5.1/css/all.min.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="_static/vendor/fontawesome/6.5.1/webfonts/fa-solid-900.woff2" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="_static/vendor/fontawesome/6.5.1/webfonts/fa-brands-400.woff2" />
<link rel="preload" as="font" type="font/woff2" crossorigin href="_static/vendor/fontawesome/6.5.1/webfonts/fa-regular-400.woff2" />

<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" href="_static/styles/sphinx-book-theme.css?digest=14f4ca6b54d191a8c7657f6c759bf11a5fb86285" type="text/css" />
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=a746c00c" />
<link rel="stylesheet" type="text/css" href="_static/styles/sphinx-book-theme.css?v=384b581d" />
<link rel="stylesheet" type="text/css" href="_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />

<!-- Pre-loaded scripts that we'll load fully later -->
<link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=e353d410970836974a52" />
<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=e353d410970836974a52" />

<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
<script src="_static/jquery.js"></script>
<script src="_static/underscore.js"></script>
<script src="_static/_sphinx_javascript_frameworks_compat.js"></script>
<script src="_static/doctools.js"></script>
<script src="_static/sphinx_highlight.js"></script>
<script src="_static/scripts/sphinx-book-theme.js?digest=5a5c038af52cf7bc1a1ec88eea08e6366ee68824"></script>
<link rel="preload" as="script" href="_static/scripts/bootstrap.js?digest=8d27b9dea8ad943066ae" />
<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
<script src="_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>

<script src="_static/documentation_options.js?v=9eb32ce0"></script>
<script src="_static/doctools.js?v=888ff710"></script>
<script src="_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="_static/scripts/sphinx-book-theme.js?v=efea14e4"></script>
<script>DOCUMENTATION_OPTIONS.pagename = 'README';</script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
Expand All @@ -56,7 +53,15 @@



<a class="skip-link" href="#main-content">Skip to main content</a>
<a id="pst-skip-link" class="skip-link" href="#main-content">Skip to main content</a>

<div id="pst-scroll-pixel-helper"></div>

<button type="button" class="btn rounded-pill" id="pst-back-to-top">
<i class="fa-solid fa-arrow-up"></i>
Back to top
</button>


<input type="checkbox"
class="sidebar-toggle"
Expand Down Expand Up @@ -91,12 +96,17 @@
</form></div>
</div>

<nav class="bd-header navbar navbar-expand-lg bd-navbar">
</nav>
<header class="bd-header navbar navbar-expand-lg bd-navbar">
</header>


<div class="bd-container">
<div class="bd-container__inner bd-page-width">





<div class="bd-sidebar-primary bd-sidebar">


Expand All @@ -110,24 +120,37 @@

<div class="sidebar-primary-items__start sidebar-primary__section">
<div class="sidebar-primary-item">



<a class="navbar-brand logo" href="index.html">










<img src="_static/logo.gif" class="logo__image only-light" alt="Logo image"/>
<script>document.write(`<img src="_static/logo.gif" class="logo__image only-dark" alt="Logo image"/>`);</script>
<img src="_static/logo.gif" class="logo__image only-light" alt=" - Home"/>
<script>document.write(`<img src="_static/logo.gif" class="logo__image only-dark" alt=" - Home"/>`);</script>


</a></div>
<div class="sidebar-primary-item"><nav class="bd-links" id="bd-docs-nav" aria-label="Main">
<div class="sidebar-primary-item">

<script>
document.write(`
<button class="btn navbar-btn search-button-field search-button__button" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
<i class="fa-solid fa-magnifying-glass"></i>
<span class="search-button__default-text">Search</span>
<span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd class="kbd-shortcut__modifier">K</kbd></span>
</button>
`);
</script></div>
<div class="sidebar-primary-item"><nav class="bd-links bd-docs-nav" aria-label="Main">
<div class="bd-toc-item navbar-nav active">
<p aria-level="2" class="caption" role="heading"><span class="caption-text">HMMs</span></p>
<ul class="nav bd-sidenav">
Expand Down Expand Up @@ -238,20 +261,22 @@
</button>



<script>
document.write(`
<button class="theme-switch-button btn btn-sm btn-outline-primary navbar-btn rounded-circle" title="light/dark" aria-label="light/dark" data-bs-placement="bottom" data-bs-toggle="tooltip">
<span class="theme-switch" data-mode="light"><i class="fa-solid fa-sun"></i></span>
<span class="theme-switch" data-mode="dark"><i class="fa-solid fa-moon"></i></span>
<span class="theme-switch" data-mode="auto"><i class="fa-solid fa-circle-half-stroke"></i></span>
<button class="btn btn-sm navbar-btn theme-switch-button" title="light/dark" aria-label="light/dark" data-bs-placement="bottom" data-bs-toggle="tooltip">
<span class="theme-switch nav-link" data-mode="light"><i class="fa-solid fa-sun fa-lg"></i></span>
<span class="theme-switch nav-link" data-mode="dark"><i class="fa-solid fa-moon fa-lg"></i></span>
<span class="theme-switch nav-link" data-mode="auto"><i class="fa-solid fa-circle-half-stroke fa-lg"></i></span>
</button>
`);
</script>


<script>
document.write(`
<button class="btn btn-sm navbar-btn search-button search-button__button" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
<i class="fa-solid fa-magnifying-glass"></i>
<i class="fa-solid fa-magnifying-glass fa-lg"></i>
</button>
`);
</script>
Expand All @@ -278,10 +303,10 @@ <h1>Documentation</h1>


<div id="searchbox"></div>
<article class="bd-article" role="main">
<article class="bd-article">

<section class="tex2jax_ignore mathjax_ignore" id="documentation">
<h1>Documentation<a class="headerlink" href="#documentation" title="Permalink to this heading">#</a></h1>
<h1>Documentation<a class="headerlink" href="#documentation" title="Link to this heading">#</a></h1>
<p>To build the sphinx documentation, run</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">cd</span> <span class="n">docs</span><span class="o">/</span>
<span class="n">make</span> <span class="n">html</span>
Expand All @@ -296,22 +321,20 @@ <h1>Documentation<a class="headerlink" href="#documentation" title="Permalink to



<footer class="bd-footer-article">


<footer class="prev-next-footer">

<div class="footer-article-items footer-article__inner">

<div class="footer-article-item"><!-- Previous / next buttons -->
<div class="prev-next-area">
</div></div>

</div>

</footer>

</div>



<div class="bd-sidebar-secondary bd-toc"></div>


</div>
<footer class="bd-footer-content">
Expand All @@ -328,6 +351,7 @@ <h1>Documentation<a class="headerlink" href="#documentation" title="Permalink to

<div class="footer-item">


<p class="copyright">

© Copyright 2022, Peter Chang, Giles Harper-Donnelly, Aleyna Kara, Xinglong Li, Scott Linderman, and Kevin Murphy.
Expand All @@ -354,8 +378,8 @@ <h1>Documentation<a class="headerlink" href="#documentation" title="Permalink to
</div>

<!-- Scripts loaded after <body> so the DOM is not blocked -->
<script src="_static/scripts/bootstrap.js?digest=e353d410970836974a52"></script>
<script src="_static/scripts/pydata-sphinx-theme.js?digest=e353d410970836974a52"></script>
<script src="_static/scripts/bootstrap.js?digest=8d27b9dea8ad943066ae"></script>
<script src="_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae"></script>

<footer class="bd-footer">
</footer>
Expand Down
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