fix bug in reading IUCN 2022-2 reptile data #191
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| schedule: | |
| - cron: 0 0 * * 1 # schedule to run at midnight on Monday each week | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| name: Ubuntu | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-20.04, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'devel'} | |
| - {os: ubuntu-20.04, r: 'devel', pkgs: 'depends only'} | |
| env: | |
| _R_REMOTES_NO_ERRORS_FROM_WARNINGS_: true | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| _R_CHECK_TIMINGS_: 10 | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CI: true | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - name: Install system dependencies | |
| run: | | |
| sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable | |
| sudo apt update | |
| sudo apt-get install \ | |
| libgdal-dev libgeos-dev libproj-dev gdal-bin grass \ | |
| libgmp3-dev libmpfr-dev libudunits2-dev \ | |
| libharfbuzz-dev libfribidi-dev | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 4 | |
| extra-packages: | | |
| any::covr | |
| any::rcmdcheck | |
| any::remotes | |
| cran/XML | |
| cran/dotCall64 | |
| prepr=?ignore | |
| link2GI=?ignore | |
| rgrass=?ignore | |
| smoothr=?ignore | |
| OpenMPController=?ignore | |
| needs: | | |
| check | |
| coverage | |
| - name: Install spatial R packages | |
| run: | | |
| options(repos = "https://cloud.r-project.org/") | |
| install.packages("rgdal") | |
| install.packages("sf") | |
| install.packages("terra") | |
| install.packages("lwgeom") | |
| install.packages("link2GI") | |
| install.packages("rgrass") | |
| install.packages("smoothr") | |
| remotes::install_github("dickoa/prepr") | |
| shell: Rscript {0} | |
| - name: Session information | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Environmental variables | |
| if: matrix.config.pkgs == 'depends only' | |
| run: | | |
| echo "_R_CHECK_DEPENDS_ONLY_=true" >> $GITHUB_ENV | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| args: 'c("--no-manual", "--as-cran", "--no-build-vignettes")' | |
| upload-snapshots: true | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Test coverage | |
| if: runner.os == 'Linux' && matrix.config.r == 'release' | |
| run: covr::codecov() | |
| shell: Rscript {0} |