improve data cleaning code for BirdLife data #212
Workflow file for this run
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| schedule: | |
| - cron: 0 0 * * 1 # schedule to run at midnight on Monday each week | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| name: macOS | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| env: | |
| _R_REMOTES_NO_ERRORS_FROM_WARNINGS_: true | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| _R_CHECK_TIMINGS_: 10 | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CI: true | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - name: Install system dependencies | |
| run: | | |
| brew install gmp | |
| brew install mpfr | |
| brew install automake | |
| brew install gdal | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 5 | |
| extra-packages: | | |
| any::covr | |
| any::rcmdcheck | |
| cran/XML | |
| any::remotes | |
| prepr=?ignore | |
| link2GI=?ignore | |
| rgrass=?ignore | |
| needs: | | |
| check | |
| - name: Install R packages | |
| run: | | |
| options(repos = "https://cloud.r-project.org/") | |
| install.packages("sf") | |
| install.packages("terra") | |
| install.packages("lwgeom") | |
| install.packages("archive") | |
| remotes::install_github("prioritizr/prepr") | |
| remotes::install_github("r-spatial/link2GI") | |
| shell: Rscript {0} | |
| - name: Session information | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Set R environmental variables | |
| run: | | |
| echo GGMAP_STADIAMAPS_API_KEY="$GGMAP_KEY" >> ~/.Renviron | |
| shell: bash | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash |