Port to Ubuntu 24.04, excluding ASTE, code_aster, and FEniCS

README.md

@@ -4,7 +4,7 @@
 
 ## What does this do?
 
-Vagrant pulls an Ubuntu 20.04 "base box" and asks e.g. VirtualBox to start a virtual machine.
+Vagrant pulls an Ubuntu 24.04 "base box" and asks e.g. VirtualBox to start a virtual machine.
 It then installs basic tools (such as a desktop environment), a preCICE release,
 several solvers and adapters, as well as example and tutorial files.
 
@@ -40,7 +40,7 @@ A few things you may need:
 
 ## What is included?
 
-This box is based on the ~~[generic/ubuntu2004](https://github.com/lavabit/robox/tree/master/scripts/ubuntu2004)~~ [bento/ubuntu-20.04](https://github.com/chef/bento) base box and installs:
+This box is based on the [bento/ubuntu-24.04](https://github.com/chef/bento) base box and installs:
 
 - Xubuntu-core (Xfce desktop environment) and related tools
 - VirtualBox guest additions
@@ -58,12 +58,9 @@ This box is based on the ~~[generic/ubuntu2004](https://github.com/lavabit/robox
 - OpenFOAM v2312 and the OpenFOAM-preCICE adapter (master)
 - deal.II 9.3 from the official backports and the deal.II-preCICE adapter (master)
 - CalculiX 2.20 from source and the CalculiX-preCICE adapter (master)
-- FEniCS latest from the FEniCS PPA and the FEniCS-preCICE adapter (PIP)
 - SU2 7.5.1 and the SU2-preCICE adapter (master)
-- code_aster 14.6 and the code_aster-preCICE adapter (master)
 - DUNE 2.9.1 and the experimental DUNE-preCICE adapter (main)
 - DuMuX 3.8 and the DuMuX-preCICE adapter (v2.0.0)
-- ASTE (master)
 - Paraview from APT
 - Gnuplot
 
@@ -76,6 +73,12 @@ The adapter repositories remain in `/home/vagrant/`.
 It also adds a few shortcuts on the Desktop (see `post-install.sh`).
 At the end, it cleans up all object files and the APT cache (see `cleanup.sh`).
 
+## What should be there but is currently not included?
+
+- ASTE (master)
+- code_aster 14.6 and the code_aster-preCICE adapter (master)
+- FEniCS latest from the FEniCS PPA and the FEniCS-preCICE adapter (PIP)
+
 ## Troubleshooting
 
 ### This does not seem to work on my machine

Vagrantfile

@@ -6,7 +6,7 @@ Vagrant.configure("2") do |config|
   # This allows us to create performance oriented images for Linux (libvirt) and Windows (hyperv).
   # However, it does not build: https://github.com/precice/vm/issues/83
   # config.vm.box = "generic/ubuntu2004"
-  config.vm.box = "bento/ubuntu-20.04"
+  config.vm.box = "bento/ubuntu-24.04"
 
   # We don't want the box to automatically update every time it starts.
   # We can instead handle updates internally, without destroying the machine.
@@ -50,15 +50,18 @@ Vagrant.configure("2") do |config|
   config.vm.provision "shell", path: "provisioning/install-openfoam.sh", privileged: false
   config.vm.provision "shell", path: "provisioning/install-dealii.sh", privileged: false
   config.vm.provision "shell", path: "provisioning/install-calculix.sh", privileged: false
-  config.vm.provision "shell", path: "provisioning/install-fenics.sh", privileged: false
+  # FEniCS is not yet available for Ubuntu 24.04: https://launchpad.net/~fenics-packages/+archive/ubuntu/fenics
+  # config.vm.provision "shell", path: "provisioning/install-fenics.sh", privileged: false
   config.vm.provision "shell", path: "provisioning/install-fmiprecice.sh", privileged: false
   config.vm.provision "shell", path: "provisioning/install-micro-manager.sh", privileged: false
   config.vm.provision "shell", path: "provisioning/install-su2.sh", privileged: false
-  config.vm.provision "shell", path: "provisioning/install-code_aster.sh", privileged: false
+  # code_aster does not build on Ubuntu 22.04/24.04 due to multiple issues: https://github.com/precice/code_aster-adapter/issues/26
+  # config.vm.provision "shell", path: "provisioning/install-code_aster.sh", privileged: false
   config.vm.provision "shell", path: "provisioning/install-dune.sh", privileged: false
   config.vm.provision "shell", path: "provisioning/install-paraview.sh", privileged: false
   config.vm.provision "shell", path: "provisioning/install-julia-bindings.sh", privileged: false
-  config.vm.provision "shell", path: "provisioning/install-aste.sh", privileged: false
+  # VTK dependency conflicts with ParaView
+  # config.vm.provision "shell", path: "provisioning/install-aste.sh", privileged: false
 
   # Post-installation steps
   config.vm.provision "shell", path: "provisioning/post-install.sh", privileged: false

provisioning/install-aste.sh

@@ -2,9 +2,16 @@
 set -ex
 
 # Install the C++ vtk library
-sudo apt-get -y install libvtk7-dev
+
+# The following packages have unmet dependencies:
+# python3-paraview : Conflicts: python3-vtk9 but 9.1.0+really9.1.0+dfsg2-7.1build3 is to be installed
+# sudo apt-get -y install libvtk9-dev
+
 sudo apt-get -y install libmetis-dev
 
+python -m venv ~/python-venvs/aste
+source ~/python-venvs/aste/bin/activate
+
 python3 -m pip install sympy scipy jinja2
 
 # Get aste
@@ -21,3 +28,5 @@ fi
 # Add aste to PATH and libmetis to the library path
 echo "export PATH=\"\${HOME}/aste/build:\${PATH}\"" >>~/.bashrc
 echo "export LD_LIBRARY_PATH=\"\${HOME}/aste/build:\${LD_LIBRARY_PATH}\"" >>~/.bashrc
+
+deactivate

provisioning/install-basics.sh

@@ -10,7 +10,7 @@ sudo apt-get update
 sudo apt-get upgrade -qy
 
 # Install the Xfce desktop environment and basic applications
-sudo apt-get install -y xubuntu-core^
+sudo apt-get install -y xubuntu-core
 sudo apt-get install -y thunar xfce4-terminal terminator bash-completion tree atril firefox firefox-locale-en baobab catfish
 sudo apt-get install -y python3-dev pipx python-is-python3 python3-venv
 
@@ -19,7 +19,7 @@ sudo apt-get install -y python3-dev pipx python-is-python3 python3-venv
 # echo "autologin-user=vagrant" | sudo tee --append /usr/share/lightdm/lightdm.conf.d/60-xubuntu.conf
 
 # Install the VirtualBox guest additions
-sudo apt-get install -y virtualbox-guest-dkms virtualbox-guest-utils virtualbox-guest-x11
+sudo apt-get install -y virtualbox-guest-utils virtualbox-guest-x11
 
 # Create Desktop
 mkdir -p ~/Desktop

provisioning/install-calculix.sh

@@ -16,7 +16,7 @@ fi
 (
     cd calculix-adapter
     git pull
-    make -j "$(nproc)"
+    ADDITIONAL_FFLAGS=-fallow-argument-mismatch  make -j "$(nproc)"
 )
 
 # Add the CalculiX adapter to PATH

provisioning/install-config-visualizer.sh

@@ -19,6 +19,6 @@ echo 'export PATH="${HOME}/.local/bin:${PATH}"' >> ~/.bashrc
 # Add the GUI in the apps menu
 mkdir -p ~/.local/share/applications ~/.local/share/icons
 
-CV_LOC_SHARE=~/.local/pipx/venvs/precice-config-visualizer-gui==${PRECICE_CONFIG_VISUALIZER_GUI_VERSION}/share
+CV_LOC_SHARE=~/.local/share/pipx/venvs/precice-config-visualizer-gui/share
 cp $CV_LOC_SHARE/applications/org.precice.config_visualizer.desktop ~/.local/share/applications/
 cp $CV_LOC_SHARE/icons/hicolor/scalable/apps/org.precice.config_visualizer.svg ~/.local/share/icons/

provisioning/install-dealii.sh

@@ -1,8 +1,6 @@
 #!/usr/bin/env bash
 set -ex
 
-# Install deal.II from the deal.II 9.3.0 backports PPA
-sudo add-apt-repository ppa:ginggs/deal.ii-9.3.0-backports
 sudo apt-get update
 sudo apt-get install -y libdeal.ii-dev
 

provisioning/install-fenics.sh

@@ -8,4 +8,7 @@ sudo apt-get -y update
 sudo apt-get -y install --no-install-recommends fenics
 
 # Install the FEniCS-preCICE adapter from PIP
-pip3 install --user fenicsprecice
+python -m venv ~/python-venvs/fenicsprecice
+source ~/python-venvs/fenicsprecice/bin/activate
+python -m pip install fenicsprecice
+deactivate

provisioning/install-fmiprecice.sh

@@ -1,5 +1,10 @@
 #!/usr/bin/env bash
 set -ex
 
+python -m venv ~/python-venvs/fmiprecice
+source ~/python-venvs/fmiprecice/bin/activate
+
 # Install the FMI runner from PIP
-pip3 install --user fmiprecice
+python -m pip install fmiprecice
+
+deactivate

provisioning/install-julia-bindings.sh

@@ -1,11 +1,16 @@
 #!/usr/bin/env bash
 
+python -m venv ~/python-venvs/julia
+source ~/python-venvs/julia/bin/activate
+
 # install latest julia
-pip3 install jill
+python -m pip install jill
 jill install --confirm
 
 # install preCICE bindings
 julia -e 'using Pkg; Pkg.add("PreCICE")'
 
 # to test the installation, run the following command:
 # julia -e 'using Pkg; Pkg.test("PreCICE")'
+
+deactivate

provisioning/install-micro-manager.sh

@@ -1,4 +1,9 @@
 #!/usr/bin/env bash
 set -ex
 
-pip install --user micro-manager-precice
+python -m venv ~/python-venvs/micro-manager
+source ~/python-venvs/micro-manager/bin/activate
+
+python -m pip install micro-manager-precice
+
+deactivate

provisioning/install-precice.sh

@@ -58,11 +58,16 @@ sudo apt-get -y install gnuplot # needed for watchpoint scripts of tutorials
 ### OPTIONAL - preCICE Python bindings and Python example
 # Get PIP and the preCICE Python bindings
 sudo apt-get install -y python3-pip
-pip3 install --upgrade pip
-pip3 install --user pyprecice
 
-# Additional python packages
-pip3 install --user pandas matplotlib polars # Needed for the post-processing scripts
+python -m venv ~/python-venvs/pyprecice
+source ~/python-venvs/pyprecice/bin/activate
+
+python -m pip install pyprecice
+
+# Additional python packages -> Should go into tutorials venvs
+# pip3 install --user pandas matplotlib polars # Needed for the post-processing scripts
+
+deactivate
 
 # Get the Python solverdummy into the examples
 if [ ! -d "python-bindings/" ]; then

provisioning/install-su2.sh

@@ -2,7 +2,10 @@
 set -ex
 
 # Install dependencies
-pip3 install --user mpi4py
+python -m venv ~/python-venvs/su2precice
+source ~/python-venvs/su2precice/bin/activate
+python -m pip install mpi4py setuptools
+sudo apt-get -y install swig
 
 # Get SU2 7.5.1 from GitHub
 wget --quiet  https://github.com/su2code/SU2/archive/refs/tags/v7.5.1.tar.gz
@@ -35,9 +38,15 @@ fi
 # Configure and build the SU2 adapter
 (
     cd "${SU2_HOME}"
+
+    # Add a previously implied header (compatibility with Ubuntu 24.04)
+    sed -i '1s/^/#include <cstdint>\n/' SU2_CFD/src/output/filewriter/CParaviewXMLFileWriter.cpp
+
     ./meson.py build -Denable-pywrapper=true --prefix="${SU2_RUN}" &&\
     ./ninja -C build install
 )
 
 # Remove the libSU2Core.a library to save space (approx. 500MB)
 rm -fv ~/SU2-7.5.1/SU2_CFD/obj/libSU2Core.a
+
+deactivate

provisioning/post-install.sh

@@ -1,10 +1,6 @@
 #!/usr/bin/env bash
 set -ex
 
-# Remove fenics-ufl package
-# Workaround for https://github.com/precice/vm/issues/4
-# pip3 uninstall -y fenics-ufl
-
 # Create a link to the default shared folder
 ln -sf /vagrant/ ~/Desktop/shared