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Snapshot computation #101

Merged
merged 55 commits into from
Jul 25, 2024
Merged

Snapshot computation #101

merged 55 commits into from
Jul 25, 2024

Commits on Jul 10, 2024

  1. Initial commit for snapshot commputation

    @tjwsch
    tjwsch committed Jul 10, 2024
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  2. Snapshot: change import of module

    @tjwsch
    tjwsch committed Jul 10, 2024
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  3. Adapt SnapshotComputation further

    @tjwsch
    tjwsch committed Jul 10, 2024
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  4. Adapt Snapshot test

    @tjwsch
    tjwsch committed Jul 10, 2024
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  5. Snapshot: Formatting

    @tjwsch
    tjwsch committed Jul 10, 2024
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  6. Prepare Snapshot class further

    @tjwsch
    tjwsch committed Jul 10, 2024
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  7. First working version of snapshot computation

    @tjwsch
    tjwsch committed Jul 10, 2024
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  8. Add snapshot test, improve snapshot and restructure

    @tjwsch
    tjwsch committed Jul 10, 2024
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  9. Add snapshot test, improve snapshot and restructure part 2

    @tjwsch
    tjwsch committed Jul 10, 2024
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  10. Improve logging, comments and minor structural improvements

    @tjwsch
    tjwsch committed Jul 10, 2024
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  11. Snapshot: extend setup and github actions

    @tjwsch
    tjwsch committed Jul 10, 2024
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  12. Move Snapshot into Micro Manager and update execution

    @tjwsch
    tjwsch committed Jul 10, 2024
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  13. Add post-processing script option and restructure snapshot example

    @tjwsch
    tjwsch committed Jul 10, 2024
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  14. Add post-processing to snapshot config file

    @tjwsch
    tjwsch committed Jul 10, 2024
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  15. Make snapshot executable and rename snapshot files

    @tjwsch
    tjwsch committed Jul 10, 2024
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  16. Restructure snapshot computation

    @tjwsch
    tjwsch committed Jul 10, 2024
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  17. Restructure config

    @tjwsch
    tjwsch committed Jul 10, 2024
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  18. Update snapshot computation still without chunking

    @tjwsch
    tjwsch committed Jul 10, 2024
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  19. Remove unintentional print statement

    @tjwsch
    tjwsch committed Jul 10, 2024
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  20. Update comments in tests

    @tjwsch
    tjwsch committed Jul 10, 2024
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  21. Read only the necessary input on each process

    @tjwsch
    tjwsch committed Jul 10, 2024
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  22. Clarify text and names

    @tjwsch
    tjwsch committed Jul 10, 2024
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  23. Add HDF5 dependency

    @tjwsch
    tjwsch committed Jul 10, 2024
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  24. Make h5py optional dependency

    @tjwsch
    tjwsch committed Jul 10, 2024
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  25. Fix h5py optional

    @tjwsch
    tjwsch committed Jul 10, 2024
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  26. Initial commit for snapshot commputation

    @tjwsch
    tjwsch committed Jul 10, 2024
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  27. Snapshot: change import of module

    @tjwsch
    tjwsch committed Jul 10, 2024
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  28. Adapt SnapshotComputation further

    @tjwsch
    tjwsch committed Jul 10, 2024
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  29. Snapshot: Formatting

    @tjwsch
    tjwsch committed Jul 10, 2024
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  30. Prepare Snapshot class further

    @tjwsch
    tjwsch committed Jul 10, 2024
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  31. First working version of snapshot computation

    @tjwsch
    tjwsch committed Jul 10, 2024
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  32. Add snapshot test, improve snapshot and restructure

    @tjwsch
    tjwsch committed Jul 10, 2024
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  33. Add snapshot test, improve snapshot and restructure part 2

    @tjwsch
    tjwsch committed Jul 10, 2024
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  34. Improve logging, comments and minor structural improvements

    @tjwsch
    tjwsch committed Jul 10, 2024
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  35. Move Snapshot into Micro Manager and update execution

    @tjwsch
    tjwsch committed Jul 10, 2024
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  36. Add post-processing script option and restructure snapshot example

    @tjwsch
    tjwsch committed Jul 10, 2024
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  37. Make snapshot executable and rename snapshot files

    @tjwsch
    tjwsch committed Jul 10, 2024
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  38. Restructure snapshot computation

    @tjwsch
    tjwsch committed Jul 10, 2024
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  39. Restructure config

    @tjwsch
    tjwsch committed Jul 10, 2024
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  40. Update snapshot computation still without chunking

    @tjwsch
    tjwsch committed Jul 10, 2024
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  41. Remove unintentional print statement

    @tjwsch
    tjwsch committed Jul 10, 2024
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  42. Update comments in tests

    @tjwsch
    tjwsch committed Jul 10, 2024
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  43. Make h5py optional dependency

    @tjwsch
    tjwsch committed Jul 10, 2024
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  44. Fix h5py optional

    @tjwsch
    tjwsch committed Jul 10, 2024
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  45. Change snapshot case in main

    @tjwsch
    tjwsch committed Jul 10, 2024
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Commits on Jul 11, 2024

  1. Move dt to simulation parameters in Snapshot and snapshot specific dt

    @tjwsch
    tjwsch committed Jul 11, 2024
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  2. Fix init

    @tjwsch
    tjwsch committed Jul 11, 2024
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Commits on Jul 23, 2024

  1. Merge branch 'develop' into snapshot_computation

    @IshaanDesai
    IshaanDesai committed Jul 23, 2024
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  2. Fix issue of using member variable in Config class

    @IshaanDesai
    IshaanDesai committed Jul 23, 2024
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  3. Fix tests

    @IshaanDesai
    IshaanDesai committed Jul 23, 2024
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Commits on Jul 24, 2024

  1. Apply suggestions from code review 

    Co-authored-by: Ishaan Desai <[email protected]>
    @tjwsch @IshaanDesai
    tjwsch and IshaanDesai authored Jul 24, 2024
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  2. Apply review suggestions

    @tjwsch
    tjwsch committed Jul 24, 2024
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  3. Remove output dir from gitignore

    @tjwsch
    tjwsch committed Jul 24, 2024
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Commits on Jul 25, 2024

  1. Extend CHANGELOG.md

    @tjwsch
    tjwsch committed Jul 25, 2024
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  2. Update CHANGELOG.md

    @tjwsch
    tjwsch authored Jul 25, 2024
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