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@kimrutherford @github-actions
kimrutherford authored and github-actions[bot] committed Aug 14, 2024
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10,444 changes: 5,222 additions & 5,222 deletions data/alleles.tsv
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171 changes: 117 additions & 54 deletions data/chromosome1.contig
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91 changes: 59 additions & 32 deletions data/chromosome2.contig
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ FH
FT CDS complement(304..693)
FT /systematic_id="SPBC1348.15"
FT /product="Schizosaccharomyces pombe specific protein,
FT ubiquitin related"
FT F-box"
FT /controlled_curation="term=genome organization, telomeric
FT duplication; date=20110311"
FT /controlled_curation="term=warning, new gene;
Expand Down Expand Up @@ -2188,9 +2188,9 @@ FT score=13.891300; db_xref=PMID:30566651"
FT CDS join(189665..189919,189978..190205)
FT /EC_number="6.3.2.19"
FT /colour=7
FT /primary_name="ubc16"
FT /product="ubiquitin conjugating enzyme E2 Ubc16
FT (predicted)"
FT /synonym="ubc16"
FT /product="peroxisome membrane ubiquitin conjugating enzyme
FT E2 Ubc16 Pex4"
FT /db_xref="SPD:31/31E08"
FT /systematic_id="SPBC1198.09"
FT /controlled_curation="term=orthologous to S. cerevisiae
Expand All @@ -2201,6 +2201,7 @@ FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20081110"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20081110"
FT /primary_name="pex4"
FT 3'UTR 190206..191786
FT /systematic_id="SPBC1198.09"
FT /db_xref="PMID:21511999"
Expand Down Expand Up @@ -10073,8 +10074,8 @@ FT /product="cell surface glycoprotein, flocculin Pfl3, DIPSY
FT family"
FT /db_xref="SPD:47/47E03"
FT /systematic_id="SPBC947.04"
FT /controlled_curation="term=sequence feature, repeat
FT containing; cv=sequence_feature; date=19700101"
FT /controlled_curation="term=misc, repeat containing;
FT date=19700101"
FT /controlled_curation="term=DIPSY domain;
FT db_xref=PMID:17870620; date=20081222"
FT /controlled_curation="term=misc functional group, cell
Expand Down Expand Up @@ -10314,8 +10315,8 @@ FT /systematic_id="SPBPJ4664.02"
FT /controlled_curation="term=misc functional group, cell
FT surface glycoprotein; cv=m_f_g; qualifier=predicted;
FT date=20090225"
FT /controlled_curation="term=sequence feature, repeat
FT containing; cv=sequence_feature; date=20100104"
FT /controlled_curation="term=misc, repeat containing;
FT date=20100104"
FT /controlled_curation="term=misc, cell surface
FT glycoprotein, flocculin, related to Gsf2; date=20140823"
FT /controlled_curation="term=species distribution,
Expand Down Expand Up @@ -24300,7 +24301,8 @@ FT /product="non-coding RNA"
FT /obsolete_name="SPBC83.12-antisense-1"
FT CDS 1532018..1532503
FT /colour=8
FT /product="Schizosaccharomyces pombe specific protein"
FT /product="Schizosaccharomyces pombe specific protein,
FT ubiquitin conjugatiing enzyme-like"
FT /db_xref="SPD:04/04E09"
FT /systematic_id="SPBC83.12"
FT /controlled_curation="term=species distribution,
Expand Down Expand Up @@ -26312,7 +26314,7 @@ FT /systematic_id="SPBC21B10.02"
FT /db_xref="PMID:21511999"
FT CDS complement(1669719..1670144)
FT /colour=10
FT /product="conserved fungal protein, posibly RNA binding,
FT /product="conserved fungal protein, possibly RNA binding,
FT low similarity to ribosomal protein L3"
FT /db_xref="SPD:05/05B10"
FT /systematic_id="SPBC21B10.02"
Expand Down Expand Up @@ -33975,8 +33977,6 @@ FT condition=FYECO:0000126; during=GO:0072690;
FT score=10.049500; db_xref=PMID:30566651"
FT CDS 2141268..2142623
FT /colour=7
FT /note="repeat region consensus DSESESSSEDSDSSSSSS ~7
FT copies?"
FT /product="nucleocytoplasmic transport chaperone Srp40
FT (predicted)"
FT /db_xref="SPD:21/21A08"
Expand All @@ -33995,8 +33995,10 @@ FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; date=20081110"
FT /controlled_curation="term=species distribution,
FT predominantly single copy (one to one); date=20081110"
FT /controlled_curation="term=sequence feature, repeat
FT containing; cv=sequence_feature; date=20100208"
FT /controlled_curation="term=misc, repeat containing;
FT date=20100208"
FT /controlled_curation="term=misc, repeat region consensus
FT DSESESSSEDSDSSSSSS ~7 copies; db_xref=; date=20240813"
FT /primary_name="srp40"
FT lncRNA complement(2141565..2141980)
FT /db_xref="PMID:29914874"
Expand Down Expand Up @@ -37951,13 +37953,29 @@ FT 3'UTR complement(2372008..2372071)
FT /systematic_id="SPBC19G7.18c"
FT /db_xref="PMID:21511999"
FT CDS complement(join(2372072..2372611,2372658..2372728,2372777..2372924))
FT /colour=12
FT /product="Schizosaccharomyces specific protein"
FT /colour=7
FT /product="OCIA domain-containing protein, involved in
FT endocytosis pathway"
FT /synonym="SPBC19G7.11c"
FT /db_xref="SPD:52/52A06"
FT /systematic_id="SPBC19G7.18c"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; db_xref=PB_REF:0000008,PMID:37156916;
FT date=20240811"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; db_xref=PB_REF:0000008; date=20240811"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes only; db_xref=PB_REF:0000008; date=20240811"
FT /controlled_curation="term=species distribution, conserved
FT in vertebrates; db_xref=PB_REF:0000008; date=20240811"
FT /controlled_curation="term=species distribution, conserved
FT in metazoa; db_xref=PB_REF:0000008; date=20240811"
FT /controlled_curation="term=species distribution, no
FT apparent S. cerevisiae ortholog; date=20240811"
FT /controlled_curation="term=human OCIAD1 and OCIAD2
FT ortholog; db_xref=PB_REF:0000008; date=20240811"
FT /controlled_curation="term=human OCIAD1 and OCIAD2
FT ortholog; db_xref=PB_REF:0000008; date=20240811"
FT lncRNA 2372362..2373651
FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.5621"
Expand Down Expand Up @@ -39064,8 +39082,8 @@ FT /primary_name="map4"
FT /product="cell surface adhesion protein for conjugation
FT Map4"
FT /db_xref="SPD:47/47C09"
FT /controlled_curation="term=sequence feature, repeat
FT containing; cv=sequence_feature; date=20060804"
FT /controlled_curation="term=misc, repeat containing;
FT date=20060804"
FT /controlled_curation="term=misc, required in h+ but not in
FT h-cells; db_xref=PMID:16857197; date=20060804"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -44477,12 +44495,16 @@ FT /db_xref="PMID:29914874"
FT /systematic_id="SPNCRNA.5813"
FT /product="non-coding RNA"
FT CDS 2774697..2776055
FT /colour=12
FT /product="Schizosaccharomyces specific methyltransferase"
FT /colour=10
FT /product="methyltransferase, sterol related"
FT /db_xref="SPD:21/21B02"
FT /systematic_id="SPBC685.03"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT /controlled_curation="term=species distribution, conserved
FT eukaryotic protein; date=20240810"
FT /controlled_curation="term=species distribution, orthologs
FT cannot be distinguished; date=20240810"
FT 3'UTR 2776056..2776063
FT /systematic_id="SPBC685.03"
FT /db_xref="PMID:18641648"
Expand Down Expand Up @@ -54432,12 +54454,17 @@ FT 3'UTR complement(3359121..3359359)
FT /systematic_id="SPBC11C11.06c"
FT /db_xref="PMID:21511999"
FT CDS complement(3359360..3359896)
FT /colour=12
FT /product="Schizosaccharomyces specific protein"
FT /colour=7
FT /product="mitochondrial outer membrane receptor for
FT cytosolic ribosomes"
FT /db_xref="SPD:42/42C04"
FT /systematic_id="SPBC11C11.06c"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; db_xref=PB_REF:0000008; date=20240811"
FT /controlled_curation="term=orthologous to S. cerevisiae
FT YBR230C; db_xref=PB_REF:0000008; date=20240811"
FT /controlled_curation="term=species distribution,
FT Schizosaccharomyces specific; date=20140820"
FT predominantly single copy (one to one); date=20240811"
FT 5'UTR complement(3359897..3359972)
FT /systematic_id="SPBC11C11.06c"
FT /db_xref="PMID:30566651"
Expand Down Expand Up @@ -64169,8 +64196,8 @@ FT /primary_name="snf59"
FT /product="SWI/SNF complex subunit Snf59"
FT /db_xref="SPD:45/45A02"
FT /systematic_id="SPBC26H8.09c"
FT /controlled_curation="term=sequence feature, repeat
FT containing; cv=sequence_feature; date=20060707"
FT /controlled_curation="term=misc, repeat containing;
FT date=20060707"
FT /controlled_curation="term=orthologous to S. cerevisiae
FT YFL049W; date=19700101"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -69191,8 +69218,8 @@ FT qualifier=increased; evidence=ECO:0000006;
FT db_xref=PMID:11376151; date=20080908"
FT /controlled_curation="term=species distribution, orthologs
FT cannot be distinguished; date=19700101"
FT /controlled_curation="term=sequence feature, repeat
FT containing; date=20100427"
FT /controlled_curation="term=misc, repeat containing;
FT date=20100427"
FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=19700101"
FT /controlled_curation="term=species distribution, conserved
Expand Down Expand Up @@ -69574,7 +69601,7 @@ FT /controlled_curation="term=species distribution, conserved
FT in fungi; date=20140820"
FT /controlled_curation="term=species distribution, conserved
FT in eukaryotes; date=20240809"
FT /controlled_curation="term=orthologus to S. cerevisiae
FT /controlled_curation="term=orthologous to S. cerevisiae
FT YOR350C; db_xref=PB_REF:0000008; date=20240809"
FT lncRNA complement(4293708..4294059)
FT /db_xref="PMID:29914874"
Expand Down Expand Up @@ -71556,8 +71583,8 @@ FT /product="cell surface glycoprotein, flocculin Pfl5"
FT /synonym="SPBC8E4.07c"
FT /db_xref="SPD:48/48F02"
FT /systematic_id="SPBC1289.15"
FT /controlled_curation="term=sequence feature, repeat
FT containing; cv=sequence_feature; date=19700101"
FT /controlled_curation="term=misc, repeat containing;
FT date=19700101"
FT /controlled_curation="term=misc functional group, cell
FT surface glycoprotein; cv=m_f_g; qualifier=predicted;
FT date=20090225"
Expand Down
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