Install samtools/htslib from APT #124

	name: Run tests
	on: [push, pull_request]

	jobs:
	test:
	runs-on: ubuntu-20.04
	steps:
	- name: checkout
	uses: actions/checkout@v3
	with:
	fetch-depth: 0
	- name: Install Python
	uses: actions/setup-python@v1
	with:
	python-version: 3.9
	- name: Install python dependencies
	run: \|
	sudo apt-get install subversion -y
	python -m pip install --upgrade pip
	pip install poetry
	poetry config virtualenvs.create false
	poetry install --no-dev
	- name: Install and set up transvar
	run: \|
	. transvar_env_vars.sh
	bash install_transvar_dependencies.sh
	bash set_up_transvar.sh
	- name: Run tests
	# -W because of transvar
	run: \|
	. transvar_env_vars.sh
	python -W ignore:ResourceWarning -m unittest -v

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